PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_88541g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 430aa    MW: 46995.2 Da    PI: 7.5002
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_88541g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.82.1e-09195215526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C++f++ GtC++Gd C FaHg
  MA_88541g0010 195 ACPDFRK-GTCRRGDACEFAHG 215
                    7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.97E-5189219IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-6190216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929191217IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-7195215IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5195217IPR000571Zinc finger, CCCH-type
SMARTSM0035614225248IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.484225249IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGPLPWSFFS DHSSDNHGND SVHFMSPGRS GGLNLNEPQF SSSPNSDYMN SSPSSRFAGG  60
RGFEEDRGAL SIPDFSDMSF GYDAGQSNGD FLPYKDGRGE MGVRINNAFV GSAAPSPWLD  120
DVICALQKYL PSNNEDEESL PAVDAYSCDE FRMYEFKVRR CMRGRSHDWT ECPFAHPGEK  180
ARRRDPRRFH YSGTACPDFR KGTCRRGDAC EFAHGVFECW LHPARYRTQP CKDGRSCKRR  240
VCFFAHTPQQ LRLLPGLSSP SSNSRSSASL HVASALKNFS LSASAAAYDG SPLRHALEGV  300
VSSSPPGGSL MSSPTSTLVG HSQSPPSLSP PLSPSASPPL SPEPGWSNTY RVGLQKAVLN  360
RQLPGHRRHV DRISSMPSES SRGLSSPRLM TLSDTNSQQP MVELMNSLQG LSGFSSELWE  420
QCCMAETAMG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1158490.0BT115849.1 Picea glauca clone GQ03707_G19 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024378892.12e-92zinc finger CCCH domain-containing protein 35-like isoform X2
TrEMBLB8LMK45e-97B8LMK4_PICSI; Uncharacterized protein
STRINGPP1S177_93V6.12e-91(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-73C3H family protein