PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_88419g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WRKY | ||||||||
Protein Properties | Length: 322aa MW: 35570.2 Da PI: 10.0603 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.6 | 1.9e-31 | 252 | 309 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+++WrKYGqK++kgs++pr+YY+C+s gCp++k+vers ed +++++tYegeHnh+ MA_88419g0010 252 DEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERSLEDASMLIVTYEGEHNHS 309 99***********************9988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 5.2E-20 | 204 | 248 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 7.6E-33 | 238 | 309 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.654 | 245 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-26 | 248 | 309 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.4E-38 | 250 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.4E-27 | 252 | 308 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MVSILSQKHH KHQQEQVQQD FGLAAEDALS KLNKVVSLLS RKGHARVRRG PLQTQSAAGS 60 GSEQLFMDGP NFLDLDSPNP HASASIYSSS SSDFALSQCV KQFLPCQSSS SGVLSADTNR 120 HQQLHPQMHY PQLQLQHLSP QADVMFRNGY MKLDNSMSCT PTLSSTKSFM SSLSMDGSIA 180 NDKQLLQYQS ISAAQERIPG VSSKRKCSGK GDDSSKCGST GRCHCSKRRK LRVKRTIRVP 240 AISSKLADIP PDEFSWRKYG QKPIKGSPHP RGYYKCSSMR GCPARKHVER SLEDASMLIV 300 TYEGEHNHSR LLSSNSSLIV HP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-22 | 238 | 308 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT124324 | 0.0 | BT124324.1 Picea sitchensis clone WS0472_P20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008805954.1 | 7e-85 | protein WRKY1-like isoform X1 | ||||
Refseq | XP_022744090.1 | 7e-85 | probable WRKY transcription factor 74 | ||||
Swissprot | O04336 | 8e-71 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | D5ADG5 | 0.0 | D5ADG5_PICSI; Uncharacterized protein | ||||
STRING | XP_008805954.1 | 3e-84 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1817 | 15 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28650.1 | 6e-50 | WRKY DNA-binding protein 74 |