PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_88000g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||
Protein Properties | Length: 691aa MW: 74890.3 Da PI: 6.1183 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 246 | 266 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++ d+C +aHg MA_88000g0010 246 PCPEFRK-GTCRRNDSCEYAHG 266 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50297 | 13.602 | 1 | 73 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 5.29E-11 | 1 | 93 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 7.35E-10 | 1 | 76 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 4.1E-10 | 2 | 84 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 12.022 | 33 | 68 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.8E-5 | 34 | 49 | IPR002110 | Ankyrin repeat |
Pfam | PF00023 | 4.3E-4 | 35 | 67 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 5.8E-5 | 52 | 66 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 3.9E-5 | 241 | 267 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.803 | 246 | 268 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-4 | 246 | 268 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.4E-5 | 246 | 266 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.6E-4 | 273 | 304 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 45 | 276 | 299 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MIAALFGSVD VLNYILSTYA THGLDINSGC GSDNSTALHC AAAGGSAHVV ETVKLLIQSG 60 ADANSLDAFG RRPADVIIVS PKLAHARSIL EEMLNVAVGA LLNSSIKFSS IMSDSSFHLP 120 EFVQEEPTNS CGGEYNSSQS VSPFTSPPLS SSPETSYTTS PSLSPNSIEL SKSSCDNNDK 180 KEYPVDPSLP DIKNSIYSTD EFRMFSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRRF 240 HYSCVPCPEF RKGTCRRNDS CEYAHGVFES WLHPAQYRTR LCKDGTNCAR RVCFFAHKPE 300 ELRPLYLSTG SAVPSPRITA SMDMASLAPG SPSSVLMMSP FSPTNPSKNT LFTPPMSPSS 360 PKSGHSSLAG AWSQSSLPML HLPGGGSQTS RLRATLSARD LPLDDLIRGS DNDGQIIDDF 420 SPLSNQARMN ATLAAALSGD GSTSGKYVSY GLNSVTPVNL EDLFSSEMSL QGVADSEPSV 480 LSHMGTQMPT NNSMQGHSHL QNQKQLSIST QLLQATTQMQ QAATDPQSPG HSFLQSSVLS 540 PSYSLASLGR MSSFSGDFQC HKSNESLLSP VMSPTINSRV TAFSHQDRRS YSSRDLGAHL 600 PPTSSDWGSP TGKLDWGVQG EELSKFRKSL SFGYRNSNEL DSTWIQSMVK EAPKDVQDAS 660 LDYSMETSIN GNIENSDHAV LASWMDEMHL D |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT109193 | 0.0 | BT109193.1 Picea glauca clone GQ03205_L07 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0C9S9W3 | 0.0 | A0A0C9S9W3_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_5835_3235 transcribed RNA sequence |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP709 | 15 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-115 | CCCH-type zinc finger protein with ARM repeat domain |