PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_8574268g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 249aa MW: 27660.1 Da PI: 5.4374 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.8e-20 | 46 | 96 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr+++ +g+Wv+eIr+p +k++r++lg+f+t+e+Aa+a++ a+ l+g MA_8574268g0010 46 PVYRGVRRRS-WGKWVSEIREP---NKKRRIWLGSFDTPEMAARAYDVAAFHLKG 96 68*****887.**********9...347**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.7E-14 | 46 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.9E-35 | 47 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 47 | 105 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.43E-21 | 47 | 106 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-30 | 47 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-10 | 48 | 59 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.30E-32 | 48 | 107 | No hit | No description |
PRINTS | PR00367 | 3.3E-10 | 70 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MLNSSTHTEA SSKSASTSKG GIKRIRTQDE AEPSPPQKRT LKLQYPVYRG VRRRSWGKWV 60 SEIREPNKKR RIWLGSFDTP EMAARAYDVA AFHLKGKNYA LLNFPELIDH LPHPISLSPR 120 QIQAAAAEAA AAFISASESA GNSGMSSDVN KQERRSPRNI PVSNERAVPS SSDELSAIIS 180 SDIEKASAEL WGKSDTYTIS SPVWTPVMVE DLFESLNLYT DLAEALMLPP PLFSIDVEVE 240 EQILEEDFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 5e-17 | 39 | 106 | 6 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 70 | RRRSWGKWVSEIREPNKKRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026448877.1 | 2e-39 | ethylene-responsive transcription factor ERF043-like | ||||
TrEMBL | D5ABJ6 | 4e-79 | D5ABJ6_PICSI; Uncharacterized protein | ||||
STRING | XP_006426907.1 | 5e-38 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-35 | ERF family protein |