PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_834070g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||
Protein Properties | Length: 204aa MW: 23177.9 Da PI: 9.9694 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.6e-08 | 79 | 104 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k C + +tGtC+y d+C+F Hgp MA_834070g0010 79 KPFVCYQWEATGTCSYRDNCRFPHGP 104 5568******************9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 7.977 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.4E-5 | 3 | 22 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.92E-7 | 74 | 107 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0085 | 77 | 104 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.075 | 77 | 105 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.2E-7 | 79 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MAGKCHSESC RFAHGREELR QPLRNFQRVG ARDEQEIYRT RNAKRLCRDN SAPRDSEVIS 60 VATTSGSSEG VLQKPIYKKP FVCYQWEATG TCSYRDNCRF PHGPRKLAES LEGLKNGDSA 120 TSDWKQNISN LRSHSVFKQG GIPPKPQTQN VDNVTGKNLF AGSTEKSMEI NANRTQAQQG 180 KKRLATWKWP QKISRIYGDW IDED |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2045 | 17 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35430.1 | 1e-15 | C3H family protein |