PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_80122g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 242aa MW: 26762.2 Da PI: 8.65 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 88.1 | 1.1e-27 | 4 | 101 | 1 | 93 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +C++C+vlr++C+++C+l+p++ +++q +++ +++k++G++ +++l+++ pe+ r+d+++sl+yeA+ r+ +P+ G +g+++++++ ++q+ MA_80122g0010 4 SCNGCRVLRKGCSESCILRPCLhwistAESQGNATIFLAKFYGRAGLTNLISNGPEHLRPDIFRSLLYEACGRIVNPIDGLLGLLWSGNWAVCQEG 99 6*********************9999777889*************************************************************987 PP DUF260 92 ae 93 +e MA_80122g0010 100 VE 101 76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.775 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.2E-22 | 4 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MRISCNGCRV LRKGCSESCI LRPCLHWIST AESQGNATIF LAKFYGRAGL TNLISNGPEH 60 LRPDIFRSLL YEACGRIVNP IDGLLGLLWS GNWAVCQEGV ESILQGTFPA VSWADSASHI 120 AGTAGRELHR SVNPRGRFKR LSFSKSGQKE SKRAPISNHL DSSSKSDDLG NITNALQNSK 180 FNDKYIHKYS TVFSWQEQHE FVSAHLAQTE YRLDLCKFKT RQTEAEAPCN AVGLDLTLGS 240 QG |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022009468.1 | 6e-63 | LOB domain-containing protein 41-like | ||||
TrEMBL | A0A251SGV9 | 1e-61 | A0A251SGV9_HELAN; Putative LOB domain-containing protein 41 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 2e-59 | LOB domain-containing protein 42 |