PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_77200g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 185aa MW: 20615.6 Da PI: 6.0675 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 135.8 | 1.6e-42 | 39 | 138 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+C+++Cvlapyfp+++++kfa +h++FGasn++k+l++lp e+r da+ss+vyeA ar+rdPvyG++g+i++lqq++++l+ e a MA_77200g0010 39 PCAACKLLRRRCTESCVLAPYFPQNDAQKFADAHRVFGASNIIKMLEDLPLEKRADAVSSMVYEASARLRDPVYGCAGTIWQLQQHVSKLQLEKAI 134 7******************************************************************************************99999 PP DUF260 97 lkee 100 l++e MA_77200g0010 135 LQAE 138 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.397 | 38 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.9E-42 | 39 | 136 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MPLCDLLIDA ICHDANGLLF GNCILQMSEF RGGRQTTSPC AACKLLRRRC TESCVLAPYF 60 PQNDAQKFAD AHRVFGASNI IKMLEDLPLE KRADAVSSMV YEASARLRDP VYGCAGTIWQ 120 LQQHVSKLQL EKAILQAELL HMHMQQANIS SYIRENLHIV EGGDQSISEP FSHTLHDSCD 180 ELPTA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-39 | 38 | 140 | 10 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-39 | 38 | 140 | 10 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT123753 | 0.0 | BT123753.1 Picea sitchensis clone WS04716_N08 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004251265.1 | 3e-53 | LOB domain-containing protein 1 | ||||
Swissprot | Q9SK08 | 3e-49 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | D5ABY4 | 1e-110 | D5ABY4_PICSI; Uncharacterized protein | ||||
STRING | Solyc11g072470.1.1 | 1e-52 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 1e-51 | LOB domain-containing protein 11 |