PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_76955g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 389aa MW: 44669.6 Da PI: 7.5001

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_76955g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.6e-09	206	250	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR ++++ f+ L +llP++ K +K +iL + +Y+++L MA_76955g0010 206 HMIAERNRRVKLKQHFSLLHSLLPHN-----SKRDKHSILSNTFKYMSEL 250 7899*******************8.....6*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.424	201	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-13	201	274	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.87E-8	205	255	No hit	No description
Gene3D	G3DSA:4.10.280.10	6.0E-12	205	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.7E-7	206	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-7	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence Send to blast
MTDPGFDNPI PSLLEIQLNP NMEIVAASAL EGGFNGSPVL PGAYMMMSSG ASGMMIQPKG 60 QNSSTGNIVA DSTSIMDKAR FEIPRYSTTE TSWYSSSSED MEAFYQLEHC NISQGHSHPQ 120 SFNVANNIMS VPETSMLYGQ SAFGSYLRSG HSLYVKTGRQ NLMKRCFKFL RKIDEKRREA 180 QRFQIGKIHE QHEFNASLQN KAAFHHMIAE RNRRVKLKQH FSLLHSLLPH NSKRDKHSIL 240 SNTFKYMSEL KRRVEELQQR NRALEESLRL DISRKEECSS FDQRHEEHQA TLVYRSDEVI 300 LKQSKNMPNQ VDMQINVQID PLSSPTNLMI VLLERLRELQ LEVVTVQSNI QPFNLEAHFL 360 LTQIKGDQWE SSKWENVVEV VRSTFSVNE

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence Send to blast

MTDPGFDNPI PSLLEIQLNP NMEIVAASAL EGGFNGSPVL PGAYMMMSSG ASGMMIQPKG  60
QNSSTGNIVA DSTSIMDKAR FEIPRYSTTE TSWYSSSSED MEAFYQLEHC NISQGHSHPQ  120
SFNVANNIMS VPETSMLYGQ SAFGSYLRSG HSLYVKTGRQ NLMKRCFKFL RKIDEKRREA  180
QRFQIGKIHE QHEFNASLQN KAAFHHMIAE RNRRVKLKQH FSLLHSLLPH NSKRDKHSIL  240
SNTFKYMSEL KRRVEELQQR NRALEESLRL DISRKEECSS FDQRHEEHQA TLVYRSDEVI  300
LKQSKNMPNQ VDMQINVQID PLSSPTNLMI VLLERLRELQ LEVVTVQSNI QPFNLEAHFL  360
LTQIKGDQWE SSKWENVVEV VRSTFSVNE

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP11631	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43650.1	7e-10	bHLH family protein