PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_74671g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28398.8 Da PI: 8.4264 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.1e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd +l+ +++ +G g+W++ ++ g+ R++k+c+ rw +yl MA_74671g0010 14 KGTWSPEEDRRLIAYIRTHGEGRWRSLPKSAGLVRSGKSCRFRWTNYL 61 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.1 | 1.3e-15 | 90 | 133 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 g+++++E +l+++++ + G++ W++Iar+++ gRt++++k++w +y MA_74671g0010 90 GNFSEDENDLIIKLHSLVGNK-WSLIARRLP-GRTDNEIKNYWKSY 133 89*******************.*********.***********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.1E-21 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.295 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.15E-27 | 12 | 63 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-14 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.29E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 65 | 88 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.856 | 84 | 138 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-15 | 88 | 136 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 90 | 133 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-20 | 90 | 135 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.15E-27 | 91 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.79E-11 | 91 | 134 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MGRSRSCDST HAKKGTWSPE EDRRLIAYIR THGEGRWRSL PKSAGLVRSG KSCRFRWTNY 60 LRPDLRHGNF SEDENDLIIK LHSLVGNKHG NFSEDENDLI IKLHSLVGNK WSLIARRLPG 120 RTDNEIKNYW KSYIKKKLLR RGLDPQSHRP LCSPHNSSRA APEHQTPAVQ SPGTPEIADF 180 FQQDCLESSP VLPASSNGEE HPDLNLDLCI SLSSNSAIAS NRVTDALDRI VDSNSNSVGG 240 VCCDIGLRVN CGGCC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-20 | 14 | 138 | 7 | 108 | B-MYB |
1h8a_C | 4e-20 | 14 | 138 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010028718.1 | 1e-67 | PREDICTED: myb-related protein 308 | ||||
TrEMBL | C0JTD6 | 1e-104 | C0JTD6_PICGL; R2R3-MYB transcription factor MYB17 | ||||
STRING | XP_010028718.1 | 4e-67 | (Eucalyptus grandis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38620.1 | 4e-64 | myb domain protein 4 |