PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | MA_74653g0010 | ||||||||
Common Name | WOX5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
||||||||
Family | WOX | ||||||||
Protein Properties | Length: 247aa MW: 28203.9 Da PI: 5.9653 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.5 | 3.6e-21 | 11 | 70 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+++L+el++ r+p+ae++++++++l +++ ++V++WFqN++a+e++ MA_74653g0010 11 SRWNPTAEQVTILKELYRGgMRTPTAEQIQQISSQLkrygKIEGKNVFYWFQNHKARERQ 70 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 117.1 | 8.2e-38 | 10 | 72 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +RW+Pt+eQ++iL+ely+ G+rtP++e+iq+i+++L++yGkie+kNVfyWFQN+kaRerqk+ MA_74653g0010 10 GSRWNPTAEQVTILKELYRGGMRTPTAEQIQQISSQLKRYGKIEGKNVFYWFQNHKARERQKR 72 68***********************************************************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.754 | 6 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.82E-12 | 6 | 75 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.9E-5 | 8 | 75 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.1E-19 | 11 | 70 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-8 | 11 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.95E-4 | 12 | 72 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MMITAQPASG SRWNPTAEQV TILKELYRGG MRTPTAEQIQ QISSQLKRYG KIEGKNVFYW 60 FQNHKARERQ KRRRYTIITD MLQQKPESDH WRREEAEDSS SSSQFGSLLC GNIELDAPDN 120 SSVLYASKTG SRNGTNRSLQ GRFSQQFHYN TCHMQLDKND PREEGEDDRD QMETLQLFPV 180 QGQAGSVKSE KENCSSCSGN DHNYCSSDNI SYSENNSGIR DPLELCLSSC VNETNNNSIM 240 WDFFAGH |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | KT356212 | 0.0 | KT356212.1 Pinus pinaster WUSCHEL homeobox protein WOX5 (WOX5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | R9R8K4 | 0.0 | R9R8K4_PICAB; WUSCHEL homeobox protein WOX5 |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5580 | 11 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18010.1 | 2e-32 | WUSCHEL related homeobox 1 |
Publications ? help Back to Top | |||
---|---|---|---|
|