PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_7129732g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | Trihelix | ||||||||
Protein Properties | Length: 194aa MW: 23491.9 Da PI: 10.0502 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 82.6 | 5.1e-26 | 32 | 114 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W +qe+++ i++r e+e+++ ++k++k+lWe ++ km+++g++rs++qCk+kw+nl +ryk +++e ++ ++cp+f++l+a MA_7129732g0010 32 QWGHQETREFIAIRAELEKDFTQTKRNKTLWEIIAGKMKSKGYRRSAEQCKCKWKNLVNRYKGKETSEPDN----GRQCPFFEELDA 114 7*******************************************************************984....678******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.213 | 25 | 89 | IPR017877 | Myb-like domain |
CDD | cd12203 | 8.32E-26 | 31 | 96 | No hit | No description |
Pfam | PF13837 | 2.3E-24 | 32 | 115 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MTAMAALPLQ SPSMDAEMNQ SQLKRKDDRI PQWGHQETRE FIAIRAELEK DFTQTKRNKT 60 LWEIIAGKMK SKGYRRSAEQ CKCKWKNLVN RYKGKETSEP DNGRQCPFFE ELDAIFKERE 120 RNMDRLLLES KVGMKPKEKV RRFKRLLGEK ISNDYSEDEE ERRLREREWR IAMEKLKKEW 180 VMKDQAWRER EDQT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF087039 | 0.0 | EF087039.1 Picea sitchensis clone WS02818_C08 unknown mRNA. | |||
GenBank | EF087781 | 0.0 | EF087781.1 Picea sitchensis clone WS02749_G08 unknown mRNA. | |||
GenBank | EF676912 | 0.0 | EF676912.1 Picea sitchensis clone WS02757_M14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024381970.1 | 3e-66 | trihelix transcription factor GT-3b-like | ||||
Swissprot | Q9SDW0 | 1e-33 | TGT3A_ARATH; Trihelix transcription factor GT-3a | ||||
TrEMBL | A9P2A3 | 1e-105 | A9P2A3_PICSI; Uncharacterized protein | ||||
STRING | PP1S285_47V6.1 | 1e-65 | (Physcomitrella patens) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2262 | 15 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01380.1 | 7e-36 | Trihelix family protein |