PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_7115g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB

Protein Properties

Length: 293aa MW: 32791.7 Da PI: 6.5078

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_7115g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.5	3e-13	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ Ed +l ++++ +G g W+ +++ g++R++k+c++rw +yl MA_7115g0010 13 RGAWSRKEDMILSEYIRIHGDGGWTNLPQRAGLKRCGKSCRLRWTNYL 60 89********************************************97 PP
2	Myb_DNA-binding	49.4	1.1e-15	68	109	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +++Edel+++ +++lG++ W++Ia +++ gRt++++k++w++ MA_7115g0010 68 NISPDEDELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 109 669***************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.3E-20	5	63	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.844	8	60	IPR017930	Myb domain
SuperFamily	SSF46689	3.33E-27	11	107	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-10	12	62	IPR001005	SANT/Myb domain
Pfam	PF00249	4.0E-12	13	60	IPR001005	SANT/Myb domain
CDD	cd00167	9.72E-8	15	60	No hit	No description
PROSITE profile	PS51294	24.146	61	115	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-24	64	115	IPR009057	Homeodomain-like
SMART	SM00717	1.1E-14	65	113	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-14	68	109	IPR001005	SANT/Myb domain
CDD	cd00167	8.38E-12	70	111	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MGRSCCSKEG LNRGAWSRKE DMILSEYIRI HGDGGWTNLP QRAGLKRCGK SCRLRWTNYL 60 RPDIKLGNIS PDEDELIIRM HRLLGNRWSL IAGRLPGRTD NEIKNYWNTR LSKKLLSIDD 120 SQSKSTARNL ETSSKSPPPP PNHVFKTTPI KITTAVKFSE TVGPKRCNGY GRSNCSSAEA 180 IKLCNIKENT NSIPHDDSEH IVFDMTDVNL LETEAGNCTS AIWSLEEERS PHSYYFAVDT 240 ATLDESLSEL NVLSSPDCNL LYSASGSSTD FELEEFYREA ATLATGINDS VFT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	2e-24	11	115	25	128	MYB TRANSFORMING PROTEIN
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021804823.1	2e-67	transcription factor TT2-like
Swissprot	Q9S9K9	2e-57	MYB3_ARATH; Transcription factor MYB3
TrEMBL	B8LMJ6	1e-118	B8LMJ6_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	8e-60	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]