PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_70681g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB_related

Protein Properties

Length: 166aa MW: 18783.7 Da PI: 10.6599

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_70681g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.5	5.7e-12	58	88	16	48
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +++lG++ W++Ia +++ gRt++++k++w++yl MA_70681g0010 58 HRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 88 789**.*****.***********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.1E-6	5	52	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-11	12	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.258	40	92	IPR017930	Myb domain
SMART	SM00717	7.5E-5	46	90	IPR001005	SANT/Myb domain
CDD	cd00167	4.09E-8	53	88	No hit	No description
Gene3D	G3DSA:1.10.10.60	9.6E-16	57	88	IPR009057	Homeodomain-like
Pfam	PF00249	4.0E-10	58	88	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MGKSPCSSKE RINQGAWTDM ILSEYIRYHG DGGWRNLPVK AGLKRCGKNC RLEELIIHRL 60 LGNRWSLIAG RLPGRTDNEI KNYWNTYLSK KLAINECQAK RSHNPKTIPE SPSPPVQNHV 120 FKTIPVKTKA VRLLRSNGCN GKNGRPDQFL KFSDVKEFTA GPTVLL

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:18541146, ECO:0000269\|PubMed:9839469}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ016724	3e-60	JQ016724.1 Pinus taeda isolate 4886 hypothetical protein (0_13642_01) gene, partial cds.
GenBank	JQ016726	3e-60	JQ016726.1 Pinus taeda isolate 4876 hypothetical protein (0_13642_01) gene, partial cds.
GenBank	JQ016730	3e-60	JQ016730.1 Pinus taeda isolate 4874 hypothetical protein (0_13642_01) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022724574.1	7e-44	transcription factor MYB3-like
Swissprot	Q9S9K9	8e-38	MYB3_ARATH; Transcription factor MYB3
TrEMBL	B8LMJ6	2e-56	B8LMJ6_PICSI; Uncharacterized protein
TrEMBL	F8TJT0	1e-56	F8TJT0_PINRE; MYB-like protein (Fragment)
STRING	XP_004287618.1	7e-41	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	3e-40	myb domain protein 3

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou M, et al. Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis. Plant J., 2015. 84(2): p. 395-403 [PMID:26332741] Wada T,Hayashi N,Tominaga-Wada R Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis. Plant Signal Behav, 2015. 10(11): p. e1089372 [PMID:26339713] Wada T,Tominaga-Wada R CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression. Plant Sci., 2015. 241: p. 260-5 [PMID:26706076] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Zhou M, et al. LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis. Plant Physiol., 2017. 174(3): p. 1348-1358 [PMID:28483877] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]