PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_67841g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 323aa    MW: 35341.1 Da    PI: 4.5858
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_67841g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.5e-19113163155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    + y+GVr +  +grWv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  MA_67841g0010 113 PVYRGVRMRT-WGRWVSEIREPKK---KSRIWLGTFPTPEMAARAHDVAALSIKG 163
                    68*****998.**********854...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-12113163IPR001471AP2/ERF domain
SMARTSM003801.5E-35114177IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-21114172IPR016177DNA-binding domain
PROSITE profilePS5103223.327114171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-31114172IPR001471AP2/ERF domain
PRINTSPR003678.8E-10115126IPR001471AP2/ERF domain
CDDcd000181.64E-31115172No hitNo description
PRINTSPR003678.8E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MAFSLESSST SLDERHGRSP RADFGSPDFT NSCSFCDSSD GNCIYPSSSI HNVAESPSTG  60
SSASDSVLRL MQNRMRKRRA EEINNAHESG EEESAVCNGD KQQGVRIKGK RYPVYRGVRM  120
RTWGRWVSEI REPKKKSRIW LGTFPTPEMA ARAHDVAALS IKGKSAFLNF PHIASSLPRP  180
ATLSPRDIQA AAAVAAAEFH MPSEEDRSED RSADPVGTNN AIPIDPDTVI PGECGNNEEA  240
AAVCASNSDL VSSFLSENEW MTIDDDILFD LPNILGNMAE GLLVAPPWML EQEELYGNTY  300
SPADNFYDVN GSICGETSLW NHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18103172373Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ0549471e-158FJ054947.2 Pinus taeda isolate 1363 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549481e-158FJ054948.2 Pinus taeda isolate 1356 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549491e-158FJ054949.2 Pinus taeda isolate 1355 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549501e-158FJ054950.2 Pinus taeda isolate 1357 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549511e-158FJ054951.2 Pinus taeda isolate 1365 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549551e-158FJ054955.1 Pinus taeda isolate 1367 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549561e-158FJ054956.2 Pinus taeda isolate 1362 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549571e-158FJ054957.2 Pinus taeda isolate 1352 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549581e-158FJ054958.2 Pinus taeda isolate 1358 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549601e-158FJ054960.1 Pinus taeda isolate 1360 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549611e-158FJ054961.2 Pinus taeda isolate 1359 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549631e-158FJ054963.1 Pinus taeda isolate 1354 anonymous locus 0_14481_01 genomic sequence.
GenBankFJ0549641e-158FJ054964.2 Pinus taeda isolate 1353 anonymous locus 0_14481_01 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LM171e-116B8LM17_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-45ERF family protein