PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_67616g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 306aa    MW: 34676.3 Da    PI: 6.0749
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_67616g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.2e-12188213126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    y   +C+++ +tG+C yGd CkF+H+
  MA_67616g0010 188 YQPDICKDYKETGYCGYGDACKFMHD 213
                    67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.79E-9186218IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577187215IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-7187214IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-10188213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-12188218IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.104.3E-10250288IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.3E-9260287No hitNo description
CDDcd001622.16E-5261287No hitNo description
PfamPF134451.2E-5261285IPR027370RING-type zinc-finger, LisH dimerisation motif
PROSITE profilePS500898.506261284IPR001841Zinc finger, RING-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MAETNETGPS QQQTCNFFKK PARNKNIRKR EVEEETEEDN NEGSAVVQKP KAAKKPDNKM  60
HFSSGPSKKS NIEGNDSETA GLPTSTFFYE SSKEIQVQND SRATATLETE TEFTKDARAI  120
RERVLKQGEE SLKGKNPGDE KLYKGIHGYT DHKAGFRREH TISGEKAGGA HGPLRASAHV  180
RSSIRFDYQP DICKDYKETG YCGYGDACKF MHDRGDYKSG WQMEREWQES EKKRKNNLAR  240
GLAEEDEEEA DSDEDALPFA CYICRQPFED PVVTRCKHYF CEHCALKVGT STILVVATDW  300
LFSLQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M4e-6012871288RING finger protein 113A
5z58_M4e-6012871288RING finger protein 113A
6ff4_t4e-6012871288RING finger protein 113A
6ff7_t4e-6012871288RING finger protein 113A
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1160260.0BT116026.1 Picea glauca clone GQ03710_K19 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027064993.11e-143zinc finger CCCH domain-containing protein 1-like
RefseqXP_027177265.11e-143zinc finger CCCH domain-containing protein 1-like
SwissprotQ8GX841e-134C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A068UR941e-142A0A068UR94_COFCA; Uncharacterized protein
STRINGXP_010103154.11e-140(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-119C3H family protein