PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_59943g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 319aa    MW: 35326.5 Da    PI: 9.712
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_59943g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.91.8e-1350139299
                    EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +k +++s+v+   +l lp +f++ h+ k  ++  ++lede+g+  +  +    +  ++ l++GW++F  +++L++gD +vF+l++ ++f  +v ++
  MA_59943g0010  50 LKPMLHSHVSGGFWLGLPSHFCSIHMPK--RDEWMILEDENGEDSRTLF--LSG--KTGLSAGWRGFSIEHQLEDGDCLVFQLVQPTRF--KVYIV 137
                    68999*****************777633..5668********9988888..333..345************************997777..88888 PP

                    -S CS
             B3  98 rk 99 
                    r+
  MA_59943g0010 138 RA 139
                    76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.0E-2042141IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.5E-1742140IPR015300DNA-binding pseudobarrel domain
CDDcd100171.47E-2147138No hitNo description
PROSITE profilePS5086310.849140IPR003340B3 DNA binding domain
SMARTSM010197.7E-1749140IPR003340B3 DNA binding domain
PfamPF023622.3E-1150139IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
APIDIPHLRK SYGRRSLFSV RCANPEERQE AIESAAKIES ELGSTHPTIL KPMLHSHVSG  60
GFWLGLPSHF CSIHMPKRDE WMILEDENGE DSRTLFLSGK TGLSAGWRGF SIEHQLEDGD  120
CLVFQLVQPT RFKVYIVRAS GFESAVTSEE QPNNTEDLQN EADNPAEERS NNTDDLQNEA  180
DNSDRELQEH EASNLGKRKR PLKAGKKASK TTVETGNGKL SKKSGNVKTT VNEKETSSDA  240
KDGKKVLKKS GKVKDENEKH KSKTKGQSNK LSKKTDAGAN AESGNNKKLT NMLQTRKTTR  300
IQNRIKTSGA PSPMVMVQA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1156200.0BT115620.1 Picea glauca clone GQ03702_P24 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9951658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-40B3 family protein