PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_5767g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ZF-HD | ||||||||
Protein Properties | Length: 225aa MW: 24808.7 Da PI: 9.1532 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.2 | 7.2e-32 | 90 | 145 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eC+kNhAa++G+ha+DGCgEfm+s g egta+alkC ACgCHRnFHR+eve MA_5767g0010 90 IVRYRECQKNHAANIGSHALDGCGEFMAS-GLEGTADALKCQACGCHRNFHRQEVEG 145 689*************************9.999********************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 5.0E-19 | 91 | 141 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 4.8E-29 | 91 | 143 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-28 | 92 | 143 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 25.749 | 93 | 142 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.05E-18 | 150 | 223 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.6E-31 | 152 | 224 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 3.3E-25 | 162 | 219 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MKGNCIVHDT SRDFVRGKDP GFDLARLLSR HIQAAAEPDL SQPHHIVHET GTGNNIHGNN 60 NNAHVGQNGN GDEVKPLVEK SKKADSVEKI VRYRECQKNH AANIGSHALD GCGEFMASGL 120 EGTADALKCQ ACGCHRNFHR QEVEGEGGSG GRGVGSSSSA MKKRFRTKFS QEQKEKMHTF 180 ADQLGWRIQK HDEAAVHQFC NEAGVRRHVL KVWMHNNKNT LGKKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 6e-27 | 163 | 220 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676904 | 0.0 | EF676904.1 Picea sitchensis clone WS02757_J24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024523652.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523653.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523654.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523655.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523656.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523658.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523659.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523660.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024523661.1 | 4e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024526921.1 | 3e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024526922.1 | 3e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024526923.1 | 3e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024526924.1 | 3e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024526925.1 | 3e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024526926.1 | 3e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024526927.1 | 3e-58 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_024543025.1 | 4e-58 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024543026.1 | 4e-58 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024543027.1 | 4e-58 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024543028.1 | 4e-58 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q9SB61 | 6e-58 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A2R6WRS7 | 4e-63 | A0A2R6WRS7_MARPO; Uncharacterized protein | ||||
STRING | XP_010272957.1 | 7e-57 | (Nelumbo nucifera) | ||||
STRING | EFJ04587 | 1e-57 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 3e-54 | homeobox protein 22 |
Publications ? help Back to Top | |||
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