PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_50630g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 461aa    MW: 48888.1 Da    PI: 7.8248
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_50630g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.42.2e-12294339555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er+RR+ri +++  L+el+P++      K +Ka +L + +eY+k Lq
  MA_50630g0010 294 HSIAERQRRERIAERMKALQELVPNC-----SKADKAVMLDEIIEYVKFLQ 339
                    99***********************9.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-17287348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.04E-13287343No hitNo description
PROSITE profilePS5088817.593289338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17291348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-9294339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-14295344IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVGNEGGPVK GVTACLQKLN SQAENTQPDK TSTNHNQSQP QTEHHQAMDD FLEQILNMPG  60
WPDVGATGKA PWECSSLALD SSQNNQKLFT KSLMGSGQGM MTDFSLEDPL LACRLQQQLP  120
NENLLGPSES TRSMAIQLGT GGGNASPSQL LVGIGSPGLL AVIRSPSSGS AAAAADTITS  180
RSPTQPWRPP YVGLNPVPLS LGQTKVDTAR LLRKRLRDEE AALTRPANTG LFTNFGGGGI  240
AIGSNNEQAG QQSSYELALA QPQAQSSPPP GVVVAPTTAR PRVRARRGQA TDPHSIAERQ  300
RRERIAERMK ALQELVPNCS KADKAVMLDE IIEYVKFLQL QVKVLSMSRL GGAGAVGPLV  360
ADISADVSNN SKMKKGPENR DDEGSSITEG EVAKLMDENM GSAMQYLQSK GLCLMPLSLA  420
TTVSGRSMQP DALVRSPCAS NHVINSPQSS ESKSRSKEGT A
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1298303RQRRER
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.16e-39LJRHL1-like 1