PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_43733g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | E2F/DP | ||||||||
Protein Properties | Length: 255aa MW: 28793.7 Da PI: 9.2934 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 60.3 | 3.1e-19 | 10 | 68 | 28 | 71 |
E2F_TDP 28 nevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 +va+eLv+e d+kn+rRR+YD+lNVL+a+++i+k ek+eirwkg MA_43733g0010 10 YKVASELVAEfvnpnsthfsqdqqqfDEKNIRRRVYDALNVLMAMDIISK-EKKEIRWKG 68 589***********************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01372 | 9.6E-8 | 1 | 68 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 2.04E-14 | 5 | 69 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PIRSF | PIRSF009404 | 6.5E-90 | 8 | 252 | IPR015648 | Transcription factor DP |
Pfam | PF02319 | 1.0E-15 | 9 | 68 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 9.7E-28 | 10 | 73 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
CDD | cd14458 | 1.13E-40 | 73 | 176 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 5.75E-41 | 75 | 194 | No hit | No description |
SMART | SM01138 | 2.7E-56 | 75 | 251 | IPR014889 | Transcription factor DP, C-terminal |
Pfam | PF08781 | 2.9E-40 | 76 | 192 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MASTPTMVVY KVASELVAEF VNPNSTHFSQ DQQQFDEKNI RRRVYDALNV LMAMDIISKE 60 KKEIRWKGLP TTNLSDIEQL KTERKRLTSR IDKKRAYLQE LKEQITGLQN LVRRNERVYG 120 SGNNPSGGVT LPFILVKTRP QATVDIEISE DMQLVHFDFN STPFELHDDA FVLKAMRFCK 180 TPDSSGPVDE KPGNESAFTK KYSVLSTMHK GTSSPHSTRT SDTDSYSLSS IPGKICSSSP 240 DPGIIKARIK NENFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 2e-21 | 12 | 71 | 34 | 91 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT111117 | 0.0 | BT111117.1 Picea glauca clone GQ03232_N19 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027068073.1 | 1e-101 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_027068074.1 | 1e-101 | transcription factor-like protein DPB isoform X2 | ||||
Refseq | XP_027123244.1 | 1e-101 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_027123245.1 | 1e-101 | transcription factor-like protein DPB isoform X2 | ||||
Refseq | XP_027173114.1 | 1e-101 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_027173115.1 | 1e-101 | transcription factor-like protein DPB isoform X2 | ||||
Refseq | XP_027173131.1 | 1e-101 | transcription factor-like protein DPB isoform X1 | ||||
Refseq | XP_027173132.1 | 1e-101 | transcription factor-like protein DPB isoform X2 | ||||
Swissprot | Q9FNY2 | 2e-90 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | D5ABL1 | 1e-104 | D5ABL1_PICSI; Uncharacterized protein | ||||
STRING | XP_010241817.1 | 2e-99 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2511 | 17 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.2 | 5e-93 | Transcription factor DP |