PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_42637g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | WOX | ||||||||
Protein Properties | Length: 184aa MW: 21067.5 Da PI: 9.0035 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.4e-18 | 9 | 70 | 1 | 57 |
TT--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 rr+ +++++eq+ Le+++ + + p+a+++e+++++l ++++r+V++WFqN++a+ ++ MA_42637g0010 9 RRTGWNPSTEQIALLEAMYSEgMNSPKAHQIEQITSRLrmygNIKKRNVYYWFQNHKARIRR 70 6888****************99*************************************997 PP | |||||||
2 | Wus_type_Homeobox | 95 | 6.3e-31 | 10 | 72 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 rt W+P++eQi +Le++y++G+ +P++++i++it++L+ yG+i+++NV+yWFQN+kaR r++q MA_42637g0010 10 RTGWNPSTEQIALLEAMYSEGMNSPKAHQIEQITSRLRMYGNIKKRNVYYWFQNHKARIRRRQ 72 678*********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 11.499 | 6 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-9 | 7 | 76 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.7E-8 | 8 | 75 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-12 | 8 | 76 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.95E-7 | 9 | 72 | No hit | No description |
Pfam | PF00046 | 1.4E-15 | 9 | 70 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAEGQSIRRR TGWNPSTEQI ALLEAMYSEG MNSPKAHQIE QITSRLRMYG NIKKRNVYYW 60 FQNHKARIRR RQKLERVASI NQFHQPHSSA GTSLTDGISQ VQQQSAVVMP ERQVTADDNE 120 PPTLELFPLH PTGIAEYKSE PVNSLGLQRS VCNTDENIDE ENNARSGRGH SHNFFYFIPQ 180 NPGM |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | Q14FJ6 | 4e-66 | Q14FJ6_PICAB; Homeodomain transcription factor |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP8582 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59340.1 | 9e-27 | WUSCHEL related homeobox 2 |