PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_40234g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 390aa    MW: 41454.5 Da    PI: 7.8162
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_40234g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-1397141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ Iar +  +Rt+ q+ s+ qky
    MA_40234g0010  97 PWTEEEHRMFLLGLQKLGKGDWRGIARNFVITRTPTQVASHAQKY 141
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.274320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.29490146IPR017930Myb domain
SuperFamilySSF466894.04E-1792147IPR009057Homeodomain-like
TIGRFAMsTIGR015574.7E-1993145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-1194140IPR009057Homeodomain-like
SMARTSM007172.2E-1194144IPR001005SANT/Myb domain
CDDcd001671.27E-997142No hitNo description
PfamPF002492.2E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0030307Biological Processpositive regulation of cell growth
GO:0046686Biological Processresponse to cadmium ion
GO:0048366Biological Processleaf development
GO:2000469Biological Processnegative regulation of peroxidase activity
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MTRKCSHCGN NGHNSRTCPN RGGVKLFGVR LTDGPIRKSA SMGNLMMMAS PSSPADPSES  60
ASAAAAAAAA AADGYLSDGL VEASTSSNSR ERKKGVPWTE EEHRMFLLGL QKLGKGDWRG  120
IARNFVITRT PTQVASHAQK YFIRQSNMTR RKRRSSLFDM TPDPSATAVS VEDYSKVPSI  180
DPICDSSVQN QILPTGHTVC DSSSQNQILP TGHTVCDGSA QNQILPTSLS SAFNQGPLVE  240
SNNGAPLSSQ PASDQEFESN NSENTAEAET SFSQGVAAMA CGVPMVFPGF MAPLLPFPFP  300
MWPGFRPATT ELPPNSNIFK PRAEIPKAPM NIIDETGISK LSIGDPPGSI EPSGLSLKLL  360
NKSSRQSAFH TNPALSDSGF SSNSNAIHVV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00551DAPTransfer from AT5G47390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0852140.0EF085214.1 Picea sitchensis clone WS0272_J01 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009626132.11e-105PREDICTED: transcription factor MYB1R1 isoform X2
TrEMBLA9NV600.0A9NV60_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.14e-72MYB_related family protein