PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_355131g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 272aa    MW: 30396.9 Da    PI: 5.0305
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_355131g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd  lv +++++G g+W++I+ + g+ R+ k+c++rw +yl
   MA_355131g0010 14 KGPWTPEEDIALVSYIQEHGQGNWRLIPGRTGLLRSSKSCRLRWTNYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-22664IPR009057Homeodomain-like
PROSITE profilePS5129423.835965IPR017930Myb domain
SMARTSM007177.8E-151363IPR001005SANT/Myb domain
PfamPF002496.0E-161461IPR001005SANT/Myb domain
SuperFamilySSF466895.08E-231590IPR009057Homeodomain-like
CDDcd001676.25E-121661No hitNo description
PROSITE profilePS500903.90362105IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.5E-76599IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVRPPICDKA AIKKGPWTPE EDIALVSYIQ EHGQGNWRLI PGRTGLLRSS KSCRLRWTNY  60
LRPGIKHGNF TPYEDRIIIH LQALLGNRQS SFSSDYYRRS KGQWETKLQT DMNNAKKALF  120
EAISIQGPSS SLQDPSSSLQ GSEITSDSMR MQRTSSSPYA NSLENLSKLL EGWKKSSPKE  180
IKPPSTANPL EGKQCQSSQC SEEVPISCGS EIEGLHDADN GSLAWASSFN SSPDYCDDGV  240
SLNDIDFCQM DSYENTMDSN LPFSVLEEWL LE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-131494786B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1005808e-31BT100580.1 Picea glauca clone GQ0026_G03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R8Q94e-73A0A0D6R8Q9_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.11e-58myb domain protein 30