PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_35037g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 154aa MW: 17163.5 Da PI: 4.6633 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 80.9 | 2e-25 | 33 | 128 | 5 | 100 |
DUF260 5 CkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 Ck+ +++C+++ ++ +++++ +kfa+++++FGa nv+kl+++lp ++r +a++s+vyeA ar+++P G++g+i++lq+q++ l++++ +++++ MA_35037g0010 33 CKMEQKECKDNSTILYRIASHDLHKFAILQEVFGACNVIKLIQDLPSDQRVEAIDSMVYEASARLQEPALGCAGIIQQLQRQISDLESQITSTQAR 128 *************99999***********************************************************************9998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.889 | 28 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.8E-24 | 33 | 126 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MKGAMWDPGV VVQMGNTEEK PRILSPSAAF HDCKMEQKEC KDNSTILYRI ASHDLHKFAI 60 LQEVFGACNV IKLIQDLPSD QRVEAIDSMV YEASARLQEP ALGCAGIIQQ LQRQISDLES 120 QITSTQARIQ KIHCQQAELV AFIPGFNSTS EDDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-19 | 21 | 136 | 6 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-19 | 21 | 136 | 6 | 118 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 4e-57 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 7e-32 | LOB domain-containing protein 11 |