PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_3313g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family Trihelix
Protein Properties Length: 492aa    MW: 56438.1 Da    PI: 6.1625
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_3313g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix80.22.8e-25135231185
      trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdql 85 
                   +Wt+++v++Li+++ +++e+   ++           +kk++W++vs++m++rg+++sp+qC++k+++lnkryk+++++ +k+ t++++++ +++d +
  MA_3313g0010 135 KWTDDMVRLLITVVLYVGEDGAPECtdgnkrksgmlQKKGKWKSVSRFMMDRGCSVSPQQCEDKFNDLNKRYKRLNDILGKGtTCRVVENPSLLDTM 231
                   7********************987777788899999**********************************************77*******999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-19133257No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MLAGSTAGMM ELEGSLHHHH QQQQHHQHQQ QQIAHQNHHQ QQIAHQNHQQ QLAHHHHHLQ  60
VMGALPVAHH AGIGLENEQP LAMIESKGTP KNSMICSKGK PTTSEEDEPS FTEDGTDSHL  120
SGGKSKKNSP WQRMKWTDDM VRLLITVVLY VGEDGAPECT DGNKRKSGML QKKGKWKSVS  180
RFMMDRGCSV SPQQCEDKFN DLNKRYKRLN DILGKGTTCR VVENPSLLDT MPHLSAKTKE  240
DVRKLLSSKH LFYKEMCTYH KCNQLHMPLE LDSQSCMQSS MVAKNREGNE SCGLMKEENE  300
DGEEDDEEND DEDDEDDADG DDENEGDVEV EGMGDFGKRG RMGKSFEEGN YWVRPISNEC  360
AKPNAPDNQN ADMMGLVQDT AKIPWEQREW TKNRTLQLQE QKVSLQAQAF ELEKRRFKWQ  420
KICSKKDREL ERLKLENERM KLENERMALQ VKQKELEIEF KKSETSMTSV ALVLERLQGR  480
DQSELGRGQC LQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424433KKDRELERLK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1094690.0BT109469.1 Picea glauca clone GQ03208_N12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006850180.21e-153putative uncharacterized protein DDB_G0287265
TrEMBLW1PVN81e-151W1PVN8_AMBTC; Uncharacterized protein
STRINGERN117611e-152(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27961329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.19e-88sequence-specific DNA binding transcription factors