PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_329868g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 797aa    MW: 86111.8 Da    PI: 6.4574
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_329868g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.97.4e-08344364526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  MA_329868g0010 344 PCPDFRK-GACRRGDVCEYAHG 364
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00248310081111IPR002110Ankyrin repeat
SuperFamilySSF484033.73E-1584204IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.209.6E-1685207IPR020683Ankyrin repeat-containing domain
PfamPF127961.6E-7124198IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.512129204IPR020683Ankyrin repeat-containing domain
SMARTSM002487.2E-4129159IPR002110Ankyrin repeat
CDDcd002044.47E-12131204No hitNo description
PROSITE profilePS5008810.526164199IPR002110Ankyrin repeat
SMARTSM002480.5164196IPR002110Ankyrin repeat
SMARTSM003561.4E-5339365IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-4343366IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-5344364IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558344366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 797 aa     Download sequence    Send to blast
MSANFPACLD ARGQAFAEVA FNLLILDSTI PRQRGLYKMC GGPEHFNPRV VYDSRAAGFD  60
EENGVIASEK QDSVVKEMAE SCSPALLELA ANNDLVGFKQ ALEEGGSSVN ERSLWYGRQI  120
GFDQKMVLEQ RTPLMVAALY GSLDVLSYIL SEGRVDVNEA CGSDMSTALH CAAAGGSILA  180
IETVGVLIKA GADVNFKNAH GRKPADVIMV SPKLGSGFYL SEGGGCLFDE HGCAVSVPTS  240
SPLFSSPEAT SPAAVNSPLS SPPKSLDISK NCCDCSQKKE FAVDSSLPDI KNSIYSTDEF  300
RMYSFKVRPC SRAYSHDWTE CPFVHPGENA RRRDPRKYHY SCVPCPDFRK GACRRGDVCE  360
YAHGVFECWL HPAQYRTRLC KDGTNCCRRV CFFAHTPEEL RPLYPPTGSS MLSQRTTMTT  420
LDKMAVMNPL APGSASSVLM MSSSNPSQSS FPNSPMSPLS SANTSCHSSF GGGSWAHPNL  480
PTLHLTNGVL QASRLRTAVN ARHMHPECST ESGDYEGQLL NEFACLSTQA RGNGPTAIVS  540
SGGKTPCRPR KFKTHNVAPT NLEDLFASEV FSPKMTVSES AFPSQIQSHK AAQLSPQLQS  600
QMLSSFNTQV YPQGSTQVQM HMQHGGVDCQ SPSVFLSPPP VEPASYNLSS LGPLSSLTGE  660
LERQNSNGSP LSPVMSAAAD SRAVAFSQRD RGSSRSGDLG GSTTWSEWGS PNGKVNWGIQ  720
GEELRKFRKS ASFGIRSSDE PDLSWVQTLF KEAPMESMEG CTMARSVDIA NNVQMEATDL  780
GAWISQINPD QIAPLTL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6QYQ80.0A0A0D6QYQ8_ARACU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-155CCCH-type zinc finger protein with ARM repeat domain