PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_328535g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21189.8 Da PI: 4.3972 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 72.8 | 6.7e-23 | 65 | 153 | 9 | 99 |
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +++C ++C+l f++++ +kfa+++++FGa nv+kl +lp ++r +a++s+vyeA ar++dP G++g+i++lq+ql+ l++++ ++++ MA_328535g0010 65 QNECLENCTLLYQFASNDLHKFAILQQVFGACNVVKL--DLPSDQRVEAIDSMVYEASARLEDPAFGCTGIIHQLQRQLSDLHSQITTTQA 153 569*********************************8..899*******************************************999886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.319 | 56 | 155 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-21 | 65 | 152 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGLPIPLIGG AEVLVIASNM FEMSNSKEKQ SMGGDMDGSK IQKQKECLEK PSIGADADDS 60 KLEKQNECLE NCTLLYQFAS NDLHKFAILQ QVFGACNVVK LDLPSDQRVE AIDSMVYEAS 120 ARLEDPAFGC TGIIHQLQRQ LSDLHSQITT TQATIQKVRS QQAALLASVA GFNTAGEDVD 180 KFNPTSSASP KDYDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-19 | 51 | 148 | 6 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-19 | 51 | 148 | 6 | 104 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A9P1U3 | 9e-55 | A9P1U3_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-27 | LOB domain-containing protein 11 |