PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_20987g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 152aa    MW: 16711.8 Da    PI: 10.022
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_20987g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31e-1963114156
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++l+g+
  MA_20987g0010  63 PVYRGVRKRS-WGKWVSEIREPKK---KSRIWLGSFSTPEMAARAHDVAALCLKGH 114
                    68*****888.**********854...6*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-1363114IPR001471AP2/ERF domain
PROSITE profilePS5103223.22264121IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3164122IPR001471AP2/ERF domain
SMARTSM003807.5E-3764127IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-2164122IPR016177DNA-binding domain
PRINTSPR003672.4E-106576IPR001471AP2/ERF domain
CDDcd000182.84E-3265123No hitNo description
PRINTSPR003672.4E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MAAAQAEAAT PDLSTKQISN SSGDVVNIEE AADRDDKVQQ LESNERSVQK ERKIKGSEET  60
RHPVYRGVRK RSWGKWVSEI REPKKKSRIW LGSFSTPEMA ARAHDVAALC LKGHSAFLNF  120
PETVHHLPRP SSSAARDIQA AAVAAAFVNP PL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-18621211272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021767986.11e-45ethylene-responsive transcription factor ERF038-like
RefseqXP_022025200.17e-46ethylene-responsive transcription factor ERF039-like
SwissprotQ9LYD35e-43DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A251RPK32e-44A0A251RPK3_HELAN; Putative DNA-binding domain-containing protein
STRINGEOY228372e-44(Theobroma cacao)
STRINGXP_004501158.16e-45(Cicer arietinum)
STRINGXP_004517241.16e-45(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-38ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]