PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_20537g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | SBP | ||||||||
Protein Properties | Length: 461aa MW: 50416.2 Da PI: 8.7818 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 126.5 | 1.1e-39 | 151 | 228 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+a+ls+ak+yhrrhkvCe hska++v+v+g qrfCqqCsrfh sefDe+krsCr+rLa+hn+rrrk+q+ MA_20537g0010 151 QCQAEGCKANLSSAKHYHRRHKVCELHSKASTVVVAGFIQRFCQQCSRFHPRSEFDEGKRSCRKRLADHNRRRRKPQP 228 5**************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 6.2E-32 | 145 | 213 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.778 | 149 | 226 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.31E-37 | 150 | 230 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.2E-30 | 152 | 225 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
MQTSRPDTRS WMSSHNSDQP KPRNLMTTSQ LVQGSPASAL SRNSAAFFDS PGLHGQDQFV 60 DPCSMWRLGC SSDQTTLEQP HGVIEKRGQL VHGCYFVKAE EELDFFQARM ALNLAGAGTT 120 TYSGGASQET GHGNRFCRTG ISSCAGSQIP QCQAEGCKAN LSSAKHYHRR HKVCELHSKA 180 STVVVAGFIQ RFCQQCSRFH PRSEFDEGKR SCRKRLADHN RRRRKPQPNP CTASQCQAGT 240 SGLQIENQKT KGSPGHNTTG VQITPNINTS TSTTPSLISS VPMMMFPNTY KGQIPVLQGT 300 SNDKKSCVEF LYASIAQTGS DLSLEGRIVS DNQIDSSEYE LLQPCSLRSG LLGSEITGRF 360 SRPAPVDIQY SQSHISMKNS NSNLRVIESS KSSLNLKIFS TSNDTPAALS SMKNGGSNWI 420 LNGSSAEGVR TYDKIHESAQ STRSAYDPTP RNDAIIKWDE V |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 147 | 225 | 6 | 84 | squamosa promoter binding protein-like 4 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 208 | 225 | KRSCRKRLADHNRRRRKP |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT110043 | 0.0 | BT110043.1 Picea glauca clone GQ03215_D14 mRNA sequence. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 4e-42 | squamosa promoter binding protein-like 8 |