PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_2026g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 540aa    MW: 60627 Da    PI: 8.0446
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_2026g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-074775129
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                     +g+WT+eEde+l+  ++ +G g W++ ++
     MA_2026g0010 47 KGAWTKEEDERLIAHIRAHGEGGWRSLPK 75
                     79**********************99775 PP
2Myb_DNA-binding41.53e-13101148148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+ Ed +l+  ++ +G g W++ +r  g+ R++k+c++rw +yl
     MA_2026g0010 101 KGAWTQLEDARLIAHIRAHGEGGWRSLPRAAGLLRCGKSCRLRWINYL 148
                      79******************************99************97 PP
3Myb_DNA-binding57.92.4e-18154198147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++T+eEdel+++++ +lG++ W++Ia+++  gRt++++k++w++y
     MA_2026g0010 154 RGNFTEEEDELIIKLHSLLGNK-WSLIAARLS-GRTDNEIKNYWNTY 198
                      89********************.*********.************99 PP
4Myb_DNA-binding54.33.2e-17328372147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eEdel+++++ +lG++ W++Ia ++  gRt++++k++w+++
     MA_2026g0010 328 RGNFSEEEDELIIKLHSLLGNK-WSLIAGRLS-GRTDNEIKNYWNTH 372
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-103876IPR009057Homeodomain-like
SuperFamilySSF466894.83E-64276IPR009057Homeodomain-like
PROSITE profilePS500907.2824292IPR017877Myb-like domain
SMARTSM00717104692IPR001005SANT/Myb domain
PfamPF002491.9E-54775IPR001005SANT/Myb domain
CDDcd001679.50E-44975No hitNo description
Gene3DG3DSA:1.10.10.601.6E-2092151IPR009057Homeodomain-like
PROSITE profilePS5129412.44796148IPR017930Myb domain
SMARTSM007178.0E-10100150IPR001005SANT/Myb domain
SuperFamilySSF466894.39E-27100195IPR009057Homeodomain-like
PfamPF002497.3E-11101148IPR001005SANT/Myb domain
CDDcd001675.43E-7103148No hitNo description
PROSITE profilePS5129429.143149203IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-27152203IPR009057Homeodomain-like
SMARTSM007179.1E-18153201IPR001005SANT/Myb domain
PfamPF002491.1E-16154198IPR001005SANT/Myb domain
CDDcd001671.22E-12156199No hitNo description
PROSITE profilePS5129425.19323377IPR017930Myb domain
SMARTSM007171.2E-16327375IPR001005SANT/Myb domain
SuperFamilySSF466893.01E-14327387IPR009057Homeodomain-like
PfamPF002492.6E-15328372IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-23329374IPR009057Homeodomain-like
CDDcd001671.16E-11330373No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0090379Biological Processsecondary cell wall biogenesis involved in seed trichome differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MATGDGYITL LFSCYPFHSE LVTVPISRRL HVKMGRSPCC EKAHTNKGAW TKEEDERLIA  60
HIRAHGEGGW RSLPKAAVSI SCSLPVKMGR SPCCEKAHTN KGAWTQLEDA RLIAHIRAHG  120
EGGWRSLPRA AGLLRCGKSC RLRWINYLRP DLKRGNFTEE EDELIIKLHS LLGNKWSLIA  180
ARLSGRTDNE IKNYWNTYIK RKLLSRGLDP QTHRPLCPPH NSNTILSFVP VPEHKILAFQ  240
SPRAVEIADF FQHDRSKSLP IEPAACKDEE HPDLNLDLCI SLPSNPSHAE NRASSVDRTL  300
DSNFNSGRGL CCAHTGPQIN PNGRYLKRGN FSEEEDELII KLHSLLGNKW SLIAGRLSGR  360
TDNEIKNYWN THIKRKLLSR GLDPQTHRPL CPPHNSNTIL SFPPVPEHEI SAFQSQRAAE  420
IADFFQHDRS ECLPIEXXXX XXEIADFFQH DRSECLPIEP AASKDEEHPD LNLDLCMSLP  480
SNSSHAENRA SSVDRTVDAN FNPGRGLCCA HIGPQTNSGG RCGNRYCERN HGGFSHRVGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-27432032159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-27432032159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1024310.0BT102431.1 Picea glauca clone GQ0192_I12 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010028718.13e-87PREDICTED: myb-related protein 308
SwissprotQ9SZP14e-82MYB4_ARATH; Transcription repressor MYB4
TrEMBLA5JYE91e-121A5JYE9_PICGL; R2R3-MYB transcription factor MYB5
STRINGXP_010028718.11e-86(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.12e-84myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]