PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_19975g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 18209.8 Da PI: 5.7762 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.6 | 6.8e-41 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++++kC+++Cvlapyfp+++ kkf vh+lFG +v+kll++lp e+r da+sslvyeA+ar++dPv+G++gvi++lq++le+++ +l++ MA_19975g0010 11 ACAACKFQKKKCSDKCVLAPYFPQKDLKKFLLVHRLFGYGHVVKLLQDLPAEQRADAVSSLVYEAKARVKDPVNGCTGVISDLQKKLEEVQLQLVS 106 7*******************************************************************************************9999 PP DUF260 97 lkee 100 ++e MA_19975g0010 107 KQAE 110 8876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.643 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.5E-39 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MASQVSKPES ACAACKFQKK KCSDKCVLAP YFPQKDLKKF LLVHRLFGYG HVVKLLQDLP 60 AEQRADAVSS LVYEAKARVK DPVNGCTGVI SDLQKKLEEV QLQLVSKQAE LANISLLTVV 120 TGYDPNFYSA SQQESQDTQY TNPQVFDDDI VDPLPLWEPS IWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-34 | 12 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-34 | 12 | 111 | 12 | 111 | LOB family transfactor Ramosa2.1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LQI9 | 4e-59 | B8LQI9_PICSI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 9e-28 | LOB domain-containing protein 11 |