PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_17919g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 149aa MW: 16705.6 Da PI: 9.9163 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68 | 9.2e-22 | 9 | 41 | 1 | 33 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda 33 krienk+nrqvtfskRrng+lKKA+ELSvLCda MA_17919g0010 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDA 41 79******************************7 PP | |||||||
2 | SRF-TF | 52.8 | 5.2e-17 | 43 | 71 | 22 | 50 |
HHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 22 KKAeELSvLCdaevaviifsstgklyeys 50 KKA+ELSvLCdaeva+iifss+gklye+ MA_17919g0010 43 KKAYELSVLCDAEVALIIFSSRGKLYEFG 71 ***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.983 | 1 | 74 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.0E-34 | 1 | 73 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-20 | 1 | 41 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.24E-35 | 2 | 72 | No hit | No description |
PRINTS | PR00404 | 1.9E-19 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.5E-18 | 10 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-19 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-13 | 42 | 70 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-13 | 42 | 79 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AVKKAYELSV LCDAEVALII 60 FSSRGKLYEF GSAGYGIEIF GPFSGILCYN IRVGEGCEGA NRGCEVYSVI CLKGNLKLAI 120 TFVHVQKTFK FSPAGVYFEK ISRMRPRCT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-16 | 1 | 74 | 1 | 61 | MEF2C |
5f28_B | 3e-16 | 1 | 74 | 1 | 61 | MEF2C |
5f28_C | 3e-16 | 1 | 74 | 1 | 61 | MEF2C |
5f28_D | 3e-16 | 1 | 74 | 1 | 61 | MEF2C |
6byy_A | 4e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
6byy_B | 4e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
6byy_C | 4e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
6byy_D | 4e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_A | 3e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_B | 3e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_C | 3e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
6bz1_D | 3e-16 | 1 | 74 | 1 | 61 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time. {ECO:0000269|PubMed:19820190, ECO:0000269|Ref.8}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF083915 | 0.0 | EF083915.1 Picea sitchensis clone WS0291_M13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019159234.1 | 6e-31 | PREDICTED: MADS-box transcription factor 6 | ||||
Swissprot | Q6EU39 | 1e-31 | MADS6_ORYSJ; MADS-box transcription factor 6 | ||||
TrEMBL | A9NRI7 | 2e-89 | A9NRI7_PICSI; Uncharacterized protein | ||||
STRING | ORGLA02G0240800.1 | 1e-31 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45650.1 | 2e-32 | AGAMOUS-like 6 |