PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_17746g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 666aa    MW: 72047.5 Da    PI: 7.5877
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_17746g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07322342526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                    +C++f++ GtC++ d C +aHg
  MA_17746g0010 322 PCPDFRK-GTCRRSDVCEYAHG 342
                    8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024846003565IPR002110Ankyrin repeat
CDDcd002043.89E-1537163No hitNo description
Gene3DG3DSA:1.25.40.202.6E-1537191IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.07E-1539165IPR020683Ankyrin repeat-containing domain
PfamPF127967.0E-978152IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2982111IPR002110Ankyrin repeat
PROSITE profilePS5029716.49482160IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.6382118IPR002110Ankyrin repeat
SMARTSM002480.0021120152IPR002110Ankyrin repeat
PROSITE profilePS5008810.366120155IPR002110Ankyrin repeat
SMARTSM003561.1E-4317343IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.601322344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-4350380IPR000571Zinc finger, CCCH-type
SMARTSM0035630352375IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.042352376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MCGGPEHLKP ASPHEEGDKV KMAENQAIKV KEISESCSSL HELAANNDLI GFKKAMEEEG  60
SKIDEVNFWY GRQNGSNQMV LEQRTPLMVA ALYGSVDALK YILSIYVTCG ADVNQACGSD  120
NCTALHCAAV GGSACAVETV KLLLQSGGDV NCLDAYGRRP ADVIMVSPKL TEVKVKLEEM  180
LNAAGTGQTS PTKVANIIPG LPGLESKGME SMPSSTLLPL SVSLEASNNR SGCVHSPTSS  240
PKSMEALKGF GDVNEKKEYP VDPSFPDIKN SIYTTDEFRM FSFKVRPCSR AYSHDWTECP  300
FVHPGENARR RDPRRYHYSC VPCPDFRKGT CRRSDVCEYA HGVFECWLHP AQYRTRLCKD  360
GTNCSRRVCF FAHTSEELRP LIVSTGSAVP SPRASSSLDM SSVMSPLAPG SPSSVSMMSP  420
FLSNPQQGSV LTPPMSPSAS SVNGYGGWPQ PNVPTLHLPD YEGQLLNDFS PLSTQARMNA  480
AAAVISGGGN TTTRSGKYKS HGINTVAPTN LEDLFASEVT SPRVAVHEPS IFSQMSPQMQ  540
AHKTAHAYIQ IQNQMLPPIN TQAFSQGITQ MQQAAIEPQS PGHSLMQSPF QSSSYGLGSP  600
GRMSPRCVDV ERHNTCGSPL SPAMAATLNS RIAAFVQRDK RSHSSRDLGA NVTPNSYFTF  660
KIAKIL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0703630.0BT070363.1 Picea sitchensis clone WS02722_O11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909716.10.0zinc finger CCCH domain-containing protein 24
TrEMBLC0PPY90.0C0PPY9_PICSI; Uncharacterized protein
STRINGcassava4.1_002305m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-165CCCH-type zinc finger protein with ARM repeat domain