PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_166248g0020
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 262aa    MW: 29512.2 Da    PI: 6.6862
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_166248g0020genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18181231255
             AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd       k +r++lg+f taeeAa a+++a+ k++g
  MA_166248g0020 181 HYRGVRQRP-WGKFAAEIRD----SarKGARVWLGTFTTAEEAALAYDRAAYKMRG 231
                     7********.**********....33345*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-31180239IPR001471AP2/ERF domain
CDDcd000183.59E-30181239No hitNo description
SuperFamilySSF541717.85E-23181240IPR016177DNA-binding domain
PROSITE profilePS5103223.485181239IPR001471AP2/ERF domain
PfamPF008478.4E-14181231IPR001471AP2/ERF domain
SMARTSM003805.6E-37181245IPR001471AP2/ERF domain
PRINTSPR003676.8E-11182193IPR001471AP2/ERF domain
PRINTSPR003676.8E-11205221IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAMNSGNQEV EYTEMSVLDR IRSHLLHDFE PPSDSTKNWD PKEENFIQTA LAADLVDNSR  60
RETLMPAVKS YRPSLSVSVT RHESSHRENI PVDWGLKDSV APSLSPCISA AWTKLPLDEN  120
DSENMILCGI LKEADAKGWT PKDEPVTEIE KETGFSVKRE ADVRQEMRAA PPNLKKNVRR  180
HYRGVRQRPW GKFAAEIRDS ARKGARVWLG TFTTAEEAAL AYDRAAYKMR GSRALLNFPL  240
LLAGGKYSDT CNNTSTSEKV EE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-32180246470ATERF1
3gcc_A2e-32180246470ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026415277.17e-49ethylene-responsive transcription factor 1A-like
TrEMBLC0PQI31e-126C0PQI3_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.18e-38ethylene responsive element binding factor 1