PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_166248g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 350aa    MW: 39404 Da    PI: 4.8455
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_166248g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-19201251255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrd s    + +r++lg+f taeeAa a+++a+ k++g
  MA_166248g0010 201 HYRGVRQRP-WGKFAAEIRDSSR---QgARVWLGTFTTAEEAALAYDRAAYKMRG 251
                     7********.**********422...24*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.9E-31200260IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-22201261IPR016177DNA-binding domain
CDDcd000182.28E-30201259No hitNo description
PfamPF008475.4E-14201251IPR001471AP2/ERF domain
PROSITE profilePS5103223.301201259IPR001471AP2/ERF domain
SMARTSM003801.0E-37201265IPR001471AP2/ERF domain
PRINTSPR003671.1E-10202213IPR001471AP2/ERF domain
PRINTSPR003671.1E-10225241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MAFNSRNPEV EYTAMSVFDG IQSRLLDDFE PSFFLTGNWG YDPTRNWSPE EENFIQTALT  60
ADSVDDSRRE TETETLIAAV KSSRPLLSVS VTRHESFDWE KIPFDWGLKN SVTPSVSPCF  120
SAAWTKLPLD ENDSEDMVLY GILKEAANKG WLPRTPKEEP VTEIKKEAAL PVKLDTDIRQ  180
ETGASPPPPL PKTVKNNAGR HYRGVRQRPW GKFAAEIRDS SRQGARVWLG TFTTAEEAAL  240
AYDRAAYKMR GSRALLNFPL QVGAEDSNTC NNNTSTVEKV ESNLSKKRQR EEVEVQWDRQ  300
CRVRFEDSNT MDHEMVEELL GGKLATPPLT PSGIDMSFTG FLSRGQLTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-32199262366ATERF1
3gcc_A1e-32199262366ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0839840.0EF083984.1 Picea sitchensis clone WS0272_A02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NRQ50.0A9NRQ5_PICSI; Uncharacterized protein
STRINGA0A087G2E12e-50(Arabis alpina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.19e-40ethylene responsive element binding factor 1