PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_16595g0010

Common Name

CUC

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 453aa MW: 50976.1 Da PI: 7.5798

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_16595g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180	6.3e-56	17	145	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 lppGfrFhPtdeel+++yL +kv +++++ ++i+evd++k+ePwdLp+k+k +ekewyfFs rd+ky+tg r+nrat++gyWkatgkd+e++++ MA_16595g0010 17 LPPGFRFHPTDEELITHYLVRKVVDSTFTG-RAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGLRTNRATEAGYWKATGKDREIFNAr 111 79***********************999.89***********99999************************************986 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgek++Wvmheyrle MA_16595g0010 112 SSSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 145 7778**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-64	13	169	IPR003441	NAC domain
PROSITE profile	PS51005	61.889	17	169	IPR003441	NAC domain
Pfam	PF02365	3.2E-28	18	144	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0010160	Biological Process	formation of organ boundary
GO:0010223	Biological Process	secondary shoot formation
GO:0048366	Biological Process	leaf development
GO:0048504	Biological Process	regulation of timing of organ formation
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MEGLNFTYAQ DKGDTQLPPG FRFHPTDEEL ITHYLVRKVV DSTFTGRAIA EVDLNKCEPW 60 DLPEKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIFNA RSSSLVGMKK 120 TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY NQLPKTSKDE WVVCRIFQKS IGAKKSSSGF 180 NRSSYLDVGS PSLPPLSAVN DESGSLESEG SAREHVSCFS NPQYNNNNNN SGFRTPSHHP 240 QQQRTSADSA ELSEIASIMR STAPFIHNMA LNDPRLSMNS ISRPSPFPPF LNLRQENNHV 300 QQPPLLFSQL AAFQPNSIPT NVSFPMENQA QLHSLLPGLP QNALLRALFD QYNDPGTLKH 360 CKLEPSFGPQ LDKSGKVEQA SQWVETQPRP EINMENNGLP QQMQSQPALS LPQADTCLGI 420 EMNSEMVCNR LNRSFQVGPS STSPVDLDGF WGY

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MEGLNFTYAQ DKGDTQLPPG FRFHPTDEEL ITHYLVRKVV DSTFTGRAIA EVDLNKCEPW  60
DLPEKAKMGE KEWYFFSLRD RKYPTGLRTN RATEAGYWKA TGKDREIFNA RSSSLVGMKK  120
TLVFYKGRAP KGEKSNWVMH EYRLEGKFSY NQLPKTSKDE WVVCRIFQKS IGAKKSSSGF  180
NRSSYLDVGS PSLPPLSAVN DESGSLESEG SAREHVSCFS NPQYNNNNNN SGFRTPSHHP  240
QQQRTSADSA ELSEIASIMR STAPFIHNMA LNDPRLSMNS ISRPSPFPPF LNLRQENNHV  300
QQPPLLFSQL AAFQPNSIPT NVSFPMENQA QLHSLLPGLP QNALLRALFD QYNDPGTLKH  360
CKLEPSFGPQ LDKSGKVEQA SQWVETQPRP EINMENNGLP QQMQSQPALS LPQADTCLGI  420
EMNSEMVCNR LNRSFQVGPS STSPVDLDGF WGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-55	17	175	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-55	17	175	20	174	NAC domain-containing protein 19
3swm_B	3e-55	17	175	20	174	NAC domain-containing protein 19
3swm_C	3e-55	17	175	20	174	NAC domain-containing protein 19
3swm_D	3e-55	17	175	20	174	NAC domain-containing protein 19
3swp_A	3e-55	17	175	20	174	NAC domain-containing protein 19
3swp_B	3e-55	17	175	20	174	NAC domain-containing protein 19
3swp_C	3e-55	17	175	20	174	NAC domain-containing protein 19
3swp_D	3e-55	17	175	20	174	NAC domain-containing protein 19
4dul_A	3e-55	17	175	17	171	NAC domain-containing protein 19
4dul_B	3e-55	17	175	17	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00562	DAP	Transfer from AT5G53950	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT102493	0.0	BT102493.1 Picea glauca clone GQ0195_G17 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001292765.1	1e-110	uncharacterized protein LOC18434770
Refseq	XP_020523105.1	1e-110	uncharacterized protein LOC18434770 isoform X1
Refseq	XP_020523106.1	1e-110	uncharacterized protein LOC18434770 isoform X1
TrEMBL	G8CPZ0	0.0	G8CPZ0_PICAB; Cup-shaped cotyledon
STRING	ERN06571	1e-110	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53950.1	4e-97	NAC family protein

Publications ? help Back to Top
Larsson E,Sundstr Expression of PaNAC01, a Picea abies CUP-SHAPED COTYLEDON orthologue, is regulated by polar auxin transport and associated with differentiation of the shoot apical meristem and formation of separated cotyledons. Ann. Bot., 2012. 110(4): p. 923-34 [PMID:22778149]