PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_15251g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 27903 Da PI: 5.1756 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.3 | 1.6e-17 | 44 | 93 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+Wv+eIr+p++ + r++lg+f +e+Aa+a++ a+++++g MA_15251g0010 44 IYRGVRMRS-WGKWVSEIREPKK---KSRIWLGTFRKPEMAARAHDVAALSIKG 93 69****998.**********854...6***********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.87E-30 | 43 | 103 | No hit | No description |
Pfam | PF00847 | 5.8E-11 | 43 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-20 | 44 | 102 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.983 | 44 | 101 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-30 | 44 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-35 | 44 | 107 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 45 | 56 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-9 | 67 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MQNRSGKRRS AESNNAEDSG EEESVVYNGD KQREVIVKGK RHPIYRGVRM RSWGKWVSEI 60 REPKKKSRIW LGTFRKPEMA ARAHDVAALS IKGGSAFLNF PHLASSFLAS SLPRPATLSP 120 RDIQKAAAAS AADFHMPSGE DHNDDRSLDP VGTNIFADTV MSAQPSIKEE SAAAFASNSA 180 WISSFLSENE STIIDDDILF DLPNFFGNMA EGLLVAPPWM LEPEGLYGST YAADNFYDGN 240 GSIYVETSLW NYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-17 | 39 | 102 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF676815 | 2e-80 | EF676815.1 Picea sitchensis clone WS02753_H01 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006399666.1 | 8e-45 | dehydration-responsive element-binding protein 3 | ||||
TrEMBL | B8LM17 | 1e-120 | B8LM17_PICSI; Uncharacterized protein | ||||
STRING | XP_006399666.1 | 3e-44 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 5e-43 | ERF family protein |