PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_139924g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

MYB

Protein Properties

Length: 225aa MW: 25325.6 Da PI: 9.3929

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_139924g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.1	5.4e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed++l+ ++ +G g W++ ++ g+ R++k+c++rw +yl MA_139924g0010 14 KGAWTKQEDDRLIAHIRAHGEGGWRSLPKAAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	55.1	1.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++T+eEdel+++++ G++ W++Ia +++ gRt++++k++w+++ MA_139924g0010 67 RGSFTEEEDELIIKLHSFVGNK-WSLIAGRLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-22	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.045	9	61	IPR017930	Myb domain
SMART	SM00717	3.5E-11	13	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.9E-29	13	108	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-13	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.03E-8	16	61	No hit	No description
PROSITE profile	PS51294	27.648	62	116	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	8.7E-28	65	116	IPR009057	Homeodomain-like
SMART	SM00717	6.8E-17	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	8.4E-16	67	111	IPR001005	SANT/Myb domain
CDD	cd00167	1.48E-12	69	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MGRSPCCEKA HTNKGAWTKQ EDDRLIAHIR AHGEGGWRSL PKAAGLLRCG KSCRLRWINY 60 LRPDLKRGSF TEEEDELIIK LHSFVGNKWS LIAGRLPGRT DNEIKNYWNT HIKRKLLSKG 120 LDPQTHRPLG QPNNTRVSRP APDHEMTAFQ NPTTPEIADL FQQHRLESSP IKPTASNAEE 180 HPDLNLNLCI SLPSNSAPAV NRASSIDRTV DSNSNSSHGL CWQFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-29	13	116	26	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ469921	0.0	FJ469921.1 Picea glauca R2R3-MYB transcription factor MYB20 mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020237995.1	5e-92	myb-related protein 308
Swissprot	P81393	1e-88	MYB08_ANTMA; Myb-related protein 308
TrEMBL	C0JTD4	1e-135	C0JTD4_PICGL; R2R3-MYB transcription factor MYB20 (Fragment)
STRING	ERM93882	5e-90	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38620.1	4e-90	myb domain protein 4

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]