PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_137877g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRF
Protein Properties Length: 738aa    MW: 79267.9 Da    PI: 8.6958
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_137877g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.56.4e-25281325145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCsr+v +++k+CErH+hrgr rsrk++e 
  MA_137877g0010 281 DPEPGRCRRTDGKKWRCSRDVAPDQKYCERHMHRGRPRSRKPVEG 325
                     79****************************************986 PP
2QLQ55.41.9e-19213247337
             QLQ   3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                     FT +Q+q+L++Q+l++K+++a++PvP eLl +i+k
  MA_137877g0010 213 FTQSQWQELEHQALIFKHMLAGVPVPDELLIPIRK 247
                     9********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009513.7E-11211247IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.693212247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.4E-15213246IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166726.054281325IPR014977WRC domain
PfamPF088795.6E-21282324IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MDFGHGDGSF GAGERSMANL LNELGGEHRQ RNNSNNNNGG GGGGGGGVLS MSPANNNNNS  60
HPLKPCRSVS EMDLSKSRDG DDHHSREVQG PMKLPRTDSF PFDLKTHHHH HQFQLQNQNQ  120
QQLGRTNSMV SDGRLGYSPT NSSVSDPVSV FYSGDSAAAR TAHASLLQPF HPFKTAGLPA  180
LSMGRETANH IGMGMGMGMH AGGGVMQGSR ICFTQSQWQE LEHQALIFKH MLAGVPVPDE  240
LLIPIRKSVC ELAGLSAGPG SHHPNPSPWG PFHLRFANNT DPEPGRCRRT DGKKWRCSRD  300
VAPDQKYCER HMHRGRPRSR KPVEGGQTAI NTSGNNTTAQ SLVGGPNSSS AATNNAASSM  360
IGLAAGRSST SIMSINGVSG SSGSQFKPPL HLSPASAMPK DYRFMNWMKG EIDEQILFSE  420
ANPGSNNMRV LSQDSHSMNS LAMLSSVNNA WRLMPSKLAD TKINTNTNTN SLLQYNSSQL  480
RTIGQDFGLM PEMNLQQSQH QQQQQQQQQH SFLNNGFGVV ESVRDQSSGG QPLRHFFDDW  540
PRSRDPWSDM EAEQRSHPTN SSTTQLSISI PMTSSDFAGT NSNSPRGKVS LSSLKLSMSM  600
SARGAEDDPT QMGLGVGMGL GLMNEERQRQ NTNNWIPVSW QSSMGGPLAE VLQSTTNAAN  660
AAVTSRVCKT PGGLNLMTEA WDLSPHGSPR MASPTGVLQK TLASLSDSSS GSSPRAVAAA  720
AAAAKHDQTA LQHNLGGV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1006230.0BT100623.1 Picea glauca clone GQ0033_A02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K0M7A00.0A0A0K0M7A0_PINTB; GRF1
STRINGPP1S344_39V6.11e-104(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP4601684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-40growth-regulating factor 2