PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_137427g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 478aa    MW: 51833.4 Da    PI: 8.2405
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_137427g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.92.2e-1074100127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C +++rtG C +G +C+F+H+p
  MA_137427g0010  74 PGEPDCTYYMRTGLCGFGMSCRFNHPP 100
                     5789*********************97 PP
2zf-CCCH38.91.5e-12120145227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG Ck+G++CkF+H++
  MA_137427g0010 120 GQPECQYYLKTGSCKFGATCKFHHPR 145
                     5799********************96 PP
3zf-CCCH39.87.5e-13167191327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C +++rtG+CkyG++CkF+H++
  MA_137427g0010 167 EKECAYYMRTGQCKYGATCKFHHPQ 191
                     679********************97 PP
4zf-CCCH314.4e-10337362227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C+f+++tG Ck+G +C+++H++
  MA_137427g0010 337 GQQECQFYMKTGDCKFGMTCRYHHPK 362
                     6789********************96 PP
5zf-CCCH32.71.3e-10385408427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     + C ff r+G+Ck+G++CkF H++
  MA_137427g0010 385 PACTFFTRYGICKFGATCKFDHPM 408
                     78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.61973101IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-573100IPR000571Zinc finger, CCCH-type
PfamPF006427.3E-875100IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-578101IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-47999IPR000571Zinc finger, CCCH-type
SMARTSM003567.9E-6118145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.291118146IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-10121145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6122147IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.9E-5124145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.244164192IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-6164191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-6165192IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-10167191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-5170190IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68335363IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-4335362IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-7337362IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5338364IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4341363IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.864381409IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6381408IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-8384408IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-5385409IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MGEEKADKGL MEYNAAMQGG FARQRGLAID PDGWQQHGRP RAEIAVVEEA MWHMSLQQQH  60
ENMEAEVGPF PERPGEPDCT YYMRTGLCGF GMSCRFNHPP NRKQAAAAAR NKGEYPERLG  120
QPECQYYLKT GSCKFGATCK FHHPRDKAGS TGRAVINVYG YPLRPNEKEC AYYMRTGQCK  180
YGATCKFHHP QPVSTLVPVR GSSLFTPVHS PTTPGPQPYP GSLPTWPMQR APFIQSPRWQ  240
GPSSYAPLIL PQGIMPVPSW STYPPGQVGS ISSSDGQQQA IGAGLVYGPS SQTDPMASGI  300
QGTLSHFPPG SPGMGPPTLQ LPSSSAQRES MFPERPGQQE CQFYMKTGDC KFGMTCRYHH  360
PKERIIPVPN CVLNSLGLPL RPGAPACTFF TRYGICKFGA TCKFDHPMGH SSYSQSISSP  420
IDISVGRHQI GSASATLSSV SLSSDLVVDS GGGRSTEHSS TAEARQQPSG VENLGPDA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0708020.0BT070802.1 Picea sitchensis clone WS02750_K24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480413.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024037223.10.0zinc finger CCCH domain-containing protein ZFN-like
RefseqXP_024955986.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024955987.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF91e-169ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLC0PR620.0C0PR62_PICSI; Uncharacterized protein
STRINGXP_006480413.10.0(Citrus sinensis)
STRINGXP_006428579.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-131zinc finger protein 1