PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_135627g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 902aa    MW: 100667 Da    PI: 9.3387
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_135627g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.72.4e-071442432
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmg 32
                     W t+E++ll+ av+++G+ +W++I++++ 
   MA_135627g0010 14 WGTWEELLLAGAVERHGTQNWELISEELR 42
                     **************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.295664IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-41045IPR009057Homeodomain-like
CDDcd001671.17E-41460No hitNo description
PfamPF002491.7E-61444IPR001005SANT/Myb domain
SuperFamilySSF473709.03E-21534654IPR001487Bromodomain
SMARTSM002971.9E-17541652IPR001487Bromodomain
CDDcd043691.75E-16551647No hitNo description
Gene3DG3DSA:1.20.920.101.3E-17555652IPR001487Bromodomain
PfamPF004394.8E-12557632IPR001487Bromodomain
PROSITE profilePS5001412.016563633IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 902 aa     Download sequence    Send to blast
MNGRRREEEE ERMWGTWEEL LLAGAVERHG TQNWELISEE LRARIVSPYV FSPEACKVKY  60
DALRRRFNGH SENPDRSNDD GNSVLLEVLR ARRIAQLKTE EIPLKNDSIG SLESELRRLK  120
AGEDSKQGSE RSKDRSSAGS FTEAAPDGSE TVAWASLAKH QRIETVGEID KSEGIQSDRI  180
GPDQESNPSP VERGSPKRDP DRNEEKKAAE SVPVPVPVPV PVPVPASGPL PASRTEGGAK  240
NQHPISEVHP SSPLDSFYGS SETLADEKEN RRSRHDFVES KDSNIKGRRL RTDLALKKTD  300
LRSCRRPSGN GSHRVLMPHK PKTEDFDAET AHRSNPQQNP DDDDDDYPPP GSSPVKSEPD  360
RNGDGDQDQA SIGCTENSEL HTVDTNASER SSAAIRRARR KQGKKNPAAF GVTTTDSETS  420
RQKHDEVRTE EGSAESMDIE RKEFKGTRDE CQKGLTVDSD VLSSANPAEI SNRKGTKAFS  480
SSREASESGH RHRHGQGQGH YKECEEFTDA WNQTARSSGD SHMEDRMEGT DEIETSPMSR  540
RSRREPKVPG KLLPLLECLR TITSHKFGSL FKHKLESQNK QQYKNMIRRH MDLGMIRARL  600
EEGSYSGSLE FFRDLLLVFN NALIFYHKSS QENGAAWVLR QLANNEMAKI FQTEALLKQE  660
GPSTRKRDPR PTPGPSANPS KFNPSSRKRN ARPLSGGGRV AGRPKSTTRL NTREEHYNSQ  720
EPPKEAIEVS SSTGLKPEIE QEENFEAEAI NLSKMPKVGD ERKTSGSSIQ PKKGSGFHID  780
PKKNSNTESK KATISNIPLV ESRNNSNYHK NNSDNHHNNN NGRSPEDFLG KGAAMKEEKG  840
IRPPEPTHKQ RATDRDHLPP LKRGVGRPPK HAKRASGAYD QLPSKTTGDP EASSRPRKKL  900
RK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1894900RPRKKLR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D6R6X01e-112A0A0D6R6X0_ARACU; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.12e-23DNA-binding bromodomain-containing protein