PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MA_131805g0010

Organism

Picea abies

Taxonomic ID

3329

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

LBD

Protein Properties

Length: 163aa MW: 18137.6 Da PI: 6.5012

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MA_131805g0010	genome	ConGenIE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91	1.5e-28	35	129	4	98
DUF260 4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C + +++C ++C++ f++++ +kfa++h++FGa nv+kl+++l++++r da++s+vyeA ar++dP G++g+i +lq+q++ l++++ +++ MA_131805g0010 35 VCDMEKKECLNNCTILYRFASNDLRKFAILHQVFGACNVIKLIQDLSPDQRVDAVNSMVYEASARLQDPALGCTGIIYELQRQISVLESQITTTR 129 7**************************************************************************************99998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.032	31	132	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.8E-27	35	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
RFHQSTTGSA RLNHMMSNAK EKPLAQSPSV DFHDVCDMEK KECLNNCTIL YRFASNDLRK 60 FAILHQVFGA CNVIKLIQDL SPDQRVDAVN SMVYEASARL QDPALGCTGI IYELQRQISV 120 LESQITTTRG MIQKIRLQEA ELLASIPGFG TASEEDTTGI GHH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	6e-24	36	125	15	104	LOB family transfactor Ramosa2.1
5ly0_B	6e-24	36	125	15	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT101154	0.0	BT101154.1 Picea glauca clone GQ0069_F04 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9P1U3	2e-58	A9P1U3_PICSI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	6e-33	LOB domain-containing protein 11