PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_127060g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 391aa    MW: 43450.3 Da    PI: 8.1422
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_127060g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.23.2e-096484526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                     C f++r G C+yG+rC++ H+
  MA_127060g0010 64 VCTFYQR-GVCSYGSRCRYDHV 84
                    5999999.*************7 PP
2zf-CCCH19.22.1e-06174195426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C  fa+ G C++G++C+  Hg
  MA_127060g0010 174 PICA-FAAAGKCPRGETCPQLHG 195
                     5677.*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.153158IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-43257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-63356IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0515986IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-56183IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-46185IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-66484IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-46483IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.929170197IPR000571Zinc finger, CCCH-type
SMARTSM003560.12172196IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.2E-9221298IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.36E-10228303No hitNo description
CDDcd001620.00378238298No hitNo description
SMARTSM001841.1E-6239296IPR001841Zinc finger, RING-type
PfamPF000979.1E-7239296IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.165239297IPR001841Zinc finger, RING-type
PROSITE patternPS005180263272IPR017907Zinc finger, RING-type, conserved site
SMARTSM003560.22326354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526326355IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MVNGLTDLIS GPGDAICTCR PSRKSWWASQ GQCRVLCKYF VHGACLKGEA CEFSHDWKDQ  60
ANNVCTFYQR GVCSYGSRCR YDHVKVSRPE STFSLSPRSQ LGSEVEHKSA AVHDGVTVGN  120
NTSVAWHTGE LSGLSKPFFP PLGQVWTTGS QDVSSTSRME LEGESSFSNA ADFPICAFAA  180
AGKCPRGETC PQLHGDLCAT CGKHCLHPYR LAEREEHIKQ CQRSQKRLEA LRSSQEIECS  240
VCLDRVLSKP TAAERKFGLM SECDHPFCIS CIRNWRGNNP VPGMDVNSVL RACPVCRKLS  300
HFVIPSVIWY SNPEEKQEII DNYKKKLSSI DCRHFDFGKG TCPFGTSCFY KHAYKDGRRE  360
EVKLRHLGAA DGSTVIAKDV RLSDFLGRLG L
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625473.11e-176E3 ubiquitin-protein ligase makorin
RefseqXP_011625474.11e-176E3 ubiquitin-protein ligase makorin
SwissprotQ5ZA071e-161C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A0D6R3J60.0A0A0D6R3J6_ARACU; Uncharacterized protein
STRINGAquca_014_00814.11e-174(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40671523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-139C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]