PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_126258g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 364aa    MW: 39925.1 Da    PI: 8.1721
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_126258g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH231.4e-07108128526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C+++++ G C++G+ Ck+ H+
  MA_126258g0010 108 VCNYWLA-GNCQHGEECKYLHS 128
                     7******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.1451844IPR000571Zinc finger, CCCH-type
SMARTSM003560.011943IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5102128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77103130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7104128IPR000571Zinc finger, CCCH-type
SMARTSM003562.5E-5105129IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5108128IPR000571Zinc finger, CCCH-type
SMARTSM003202.2E-6134173IPR001680WD40 repeat
SuperFamilySSF509789.89E-37135335IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.106.1E-35136347IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004003.1E-5138173IPR001680WD40 repeat
PROSITE profilePS5029420.066141342IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.316141182IPR001680WD40 repeat
PROSITE patternPS006780160174IPR019775WD40 repeat, conserved site
PRINTSPR003201.7E-6160174IPR020472G-protein beta WD-40 repeat
SMARTSM0032015212249IPR001680WD40 repeat
SMARTSM003201.3E-5256293IPR001680WD40 repeat
PfamPF004005.4E-4261293IPR001680WD40 repeat
PROSITE profilePS5008212.747263302IPR001680WD40 repeat
PROSITE patternPS006780280294IPR019775WD40 repeat, conserved site
PRINTSPR003201.7E-6280294IPR020472G-protein beta WD-40 repeat
SMARTSM003203.2E-4296333IPR001680WD40 repeat
PfamPF004000.0044298332IPR001680WD40 repeat
PRINTSPR003201.7E-6320334IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDVEISGKHT GNKRTYTRLP RQVCVFWQEG RCNRESCNFL HVGEPGSVKR GGATNGFAPK  60
RSYNGSDERE MQAAGPPGGS RRNTSARWGR GRGGRFISDE RQKIRNKVCN YWLAGNCQHG  120
EECKYLHSFV MGSDVKFLTQ LSGHVKAIRG IAFPPESGKL YSGGQDKKVI VWDCQTGEGR  180
DIPLDDEVGC LMSEGPWIFV GLPNAIKAWN TSTSTELSLV GPRGQVHALA VGNGMLWAGT  240
HDGSILAWKF SPAANTFEPA ASLAGHTQPV VSLVSGADRL YSGSMDKTIR VWDLGTFQCI  300
QTLRDHTSVV MSLLCWDQFL LSCSLDNTVK VWVATPSGAL EVTYTHNEEH CASKVDIRSE  360
IRDG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A3e-171383328320Tako8
6g6n_A3e-171383328320Tako8
6g6n_B3e-171383328320Tako8
6g6n_C3e-171383328320Tako8
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1164460.0BT116446.1 Picea glauca clone GQ03718_N05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857936.11e-145zinc finger CCCH domain-containing protein 17
RefseqXP_011628379.11e-145zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP51e-120C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A0C9SAF70.0A0A0C9SAF7_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_3705_2455 transcribed RNA sequence
STRINGERN194031e-145(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP10651624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51980.11e-120C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]