PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_126170g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 382aa    MW: 43342.4 Da    PI: 7.1474
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_126170g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.71.7e-07127148426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C ++ + G+C+ G +C FaHg
  MA_126170g0010 127 ETCVNYKK-GYCRKGLTCEFAHG 148
                     6799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-4120149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.413123150IPR000571Zinc finger, CCCH-type
SMARTSM003560.0083123149IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-4128148IPR000571Zinc finger, CCCH-type
SMARTSM0035666158181IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MNMDNSISSP VLSPQFAFYS PSDGQGIATW IDANNVRSIS EHLWKSNLHG VNQLFSDFCD  60
SNGRLQWNMG IIEEDNGFED QSSDEFRMYK FKVVICMRDT SHDWTRCPFA HRGERARRRH  120
PSLYCGETCV NYKKGYCRKG LTCEFAHGLF ESWLHPHRYR TKRCKDGVNC DRRVCFFAHR  180
DEEIRFPSKP SSSKMKDHKN YSITPRNRSA CTNVAIPQIY NALSQDVVGS PRGAHAALML  240
LEPLYMNSPL QYNSPSPSSS SVSSGSFPGS SLGSPGCDVG DVVTAFRNVG LQDEIYKINQ  300
SVSQNHVNGD DQYSSETGVH CGLQLLESGK KLRAEIYRKF WKDQIQKEYN TSAADQPDIA  360
WVSELVEEPS KTESEHIFNE LK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1101260.0BT110126.1 Picea glauca clone GQ03216_L21 mRNA sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-46C3H family protein