PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_122815g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 475aa    MW: 52991.3 Da    PI: 6.783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_122815g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.41.6e-54201481129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelv++yL+kk+ ++++++  +i+e+d++k+ePwd+p+k+k +ekewyfFs rd+ky++g r+nrat++gyWk+tgkd+ev+s+
  MA_122815g0010  20 LPPGFRFHPTDEELVTYYLTKKILDSTFSA-LAIAEADLNKCEPWDFPAKAKIGEKEWYFFSLRDRKYPRGLRTNRATEAGYWKTTGKDREVFSS 113
                     79*************************999.67***************99999****************************************98 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrle 129
                      +++l g+kktLvfykgrapkgekt+Wvmheyrle
  MA_122815g0010 114 rSSALSGMKKTLVFYKGRAPKGEKTNWVMHEYRLE 148
                     566779***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-6212172IPR003441NAC domain
PROSITE profilePS5100559.69320172IPR003441NAC domain
PfamPF023651.7E-2821147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MESTLNPMNN AHEGDEHSQL PPGFRFHPTD EELVTYYLTK KILDSTFSAL AIAEADLNKC  60
EPWDFPAKAK IGEKEWYFFS LRDRKYPRGL RTNRATEAGY WKTTGKDREV FSSRSSALSG  120
MKKTLVFYKG RAPKGEKTNW VMHEYRLEGK FSCHPLPQNC KDEWVVCRIF EKSAVGKRSS  180
IGFMSRKAYI DLQGAPSFPS LLESPGNTTA ENDQETRSSE SESGTSAKVH DVSCFYIPME  240
PNANLTGHHL HQIECGSSSN YPDSSDQLSE MARLMKQSSY MHNRMLNDPR IYMNMTPVAA  300
PFSVSNIRRD QISSIQDQQS GIQQLPGLQG LILRNPHIPM PSNSSNLGFS TDAYFSTLHS  360
SNAVSKALVG QSAGSCPMEP FSSSCVQHKT FSNIGNMGAN NCVNSFQRTN DGLSQKLLAQ  420
PIQEADGATC LSPYINGEMT SAACNRLDRP LDELDSSAAP HVDFHSLWNI REDLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-512017817171NO APICAL MERISTEM PROTEIN
1ut4_B5e-512017817171NO APICAL MERISTEM PROTEIN
1ut7_A5e-512017817171NO APICAL MERISTEM PROTEIN
1ut7_B5e-512017817171NO APICAL MERISTEM PROTEIN
3swm_A6e-511217810174NAC domain-containing protein 19
3swm_B6e-511217810174NAC domain-containing protein 19
3swm_C6e-511217810174NAC domain-containing protein 19
3swm_D6e-511217810174NAC domain-containing protein 19
3swp_A6e-511217810174NAC domain-containing protein 19
3swp_B6e-511217810174NAC domain-containing protein 19
3swp_C6e-511217810174NAC domain-containing protein 19
3swp_D6e-511217810174NAC domain-containing protein 19
4dul_A5e-512017817171NAC domain-containing protein 19
4dul_B5e-512017817171NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019707154.15e-94protein CUP-SHAPED COTYLEDON 2 isoform X2
TrEMBLA0A482EV391e-166A0A482EV39_9SPER; NAC4 domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.17e-91NAC domain containing protein 100