PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_120602g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 461aa    MW: 50554.8 Da    PI: 5.1209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_120602g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13248299155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+++N+ ++ Lr+l+P     + ++ + a+i   ++e+Ik+Lq
  MA_120602g0010 248 QRMTHIAVERNRRKQMNEHLAVLRSLMPGF---YVQRGDQASIIGGVIEFIKELQ 299
                     79***************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.74E-14245303No hitNo description
SuperFamilySSF474593.14E-18246324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.466247298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-10248299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-14248311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.6E-11253304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010374Biological Processstomatal complex development
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MVGEAEALFL QGRSSNLAAA SDPSLLIPSL SINMIESGED QEATPMGDIL CDIFSSHEFS  60
HGNLAANSPV QDFFGILDFL ETDNHQEASK FISLIEEESS TCNKNGDNFT EVSHLHELPV  120
LEQESELEPE TDHNILNFSF SANPGGLGCS DTNAPQSINS TSLNHSDSVS SELKDSNKFI  180
GASVKNRIRS ESCKSLLQKS KSCQLRSHIY PSDFSESETD QGLEKPKHKR LKALVTATSD  240
QAEGDGQQRM THIAVERNRR KQMNEHLAVL RSLMPGFYVQ RGDQASIIGG VIEFIKELQQ  300
LLQSLESQKQ RKTYCTEVLS PRPCSSPRPP VSPRPLPASP RTPQPGNPYR PKNIQSFMPC  360
TSIDSNFETV KELVANSKSA VADVEVKIAG SNALLKTLSH KIPGQILKIV NALENLSLEI  420
LHLNISTIDD TVLNSLTLKI GIECKLSVEE LAQAVQQTFS C
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248259RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1184960.0BT118496.1 Picea glauca clone GQ04006_P07 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847338.11e-100transcription factor SPEECHLESS isoform X2
TrEMBLD5ABX00.0D5ABX0_PICSI; Uncharacterized protein
STRINGERN089191e-100(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.14e-48bHLH family protein