PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_1201g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB
Protein Properties Length: 302aa    MW: 33493.5 Da    PI: 5.1697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_1201g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT +Ed++lv +++++G g+W++ ++  g+ R++k+c++rw +yl
     MA_1201g0010 14 KGSWTSDEDQILVSYINKHGHGNWRALPKQAGLLRCGKSCRLRWTNYL 61
                     799*****************************99************97 PP
2Myb_DNA-binding461.2e-1467108144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      rg++++eE++ +++++++ G++ W+tIa +++ gRt++++k+ w
     MA_1201g0010  67 RGNFSPEEEDHIIKLHQLIGNK-WSTIALHLP-GRTDNEIKNVW 108
                      89********************.*********.********988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129422.563965IPR017930Myb domain
SuperFamilySSF466892.24E-3011108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001672.15E-111661No hitNo description
Gene3DG3DSA:1.10.10.605.7E-2565116IPR009057Homeodomain-like
PROSITE profilePS5129417.17566116IPR017930Myb domain
SMARTSM007178.6E-1166114IPR001005SANT/Myb domain
PfamPF002494.5E-1367108IPR001005SANT/Myb domain
CDDcd001677.37E-869108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGRAPCCDKM GVKKGSWTSD EDQILVSYIN KHGHGNWRAL PKQAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF SPEEEDHIIK LHQLIGNKWS TIALHLPGRT DNEIKNVWGT RLKKRLAPMK  120
AESVAVDAQP APSSSLNSST AEMAYQGSSP LSSQILCNTD ARAPSAWEIC DPIYVLPELS  180
EDLISSSNNM CTITKDYQTT STDSTLDMLH SDSRVPAISH DDNAEMVTSS SQGMRPDCDG  240
EIVISDESLN NSMNLRVDSL LQHLDAAEVD WFLDHLDNLS PAMDSNHLAT NANQLWSTDL  300
QV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-23141167108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6785020.0EF678502.1 Picea sitchensis clone WS02925_J15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LRH41e-176B8LRH4_PICSI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.18e-70myb domain protein 15