PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MA_116574g0010 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | RAV | ||||||||
Protein Properties | Length: 340aa MW: 38652.6 Da PI: 9.4893 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 38.8 | 2.4e-12 | 35 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r +lg+f +e+Aa+a+++a+ k++g MA_116574g0010 35 SQYKGVVPQP-NGRWGAQIYEK-----HQRLWLGTFNREEDAARAYDRAAIKFRG 83 78****9888.8*********3.....5************************997 PP | |||||||
2 | B3 | 100.6 | 9e-32 | 151 | 255 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+k+ tpsdv+k++rlv+pk++ae++ gg+k ++++l +ed + ++W++ ++y+k+s++yvltkGW+++vk+++L++gD+v+F++++ MA_116574g0010 151 FDKAVTPSDVGKLNRLVIPKQYAEKYfpldeasGGDKGKGIMLNFEDNNYKTWRFHYSYWKSSQSYVLTKGWSHYVKEKRLQAGDIVTFERSS-P 244 89*******************************9999*****************************************************655.8 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 +++l+++++r+ MA_116574g0010 245 SRRLFITFRRR 255 88899999987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 8.5E-18 | 35 | 91 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.15E-15 | 35 | 90 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.1E-21 | 36 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.4E-7 | 36 | 83 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-29 | 36 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.047 | 36 | 91 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 2.7E-39 | 145 | 254 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-31 | 146 | 255 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.34E-27 | 149 | 254 | No hit | No description |
SMART | SM01019 | 2.6E-23 | 151 | 256 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.1E-29 | 151 | 255 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.987 | 151 | 255 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MGSGTSTVSS ENIHSYAPPS AQGEQEKSCK KLPSSQYKGV VPQPNGRWGA QIYEKHQRLW 60 LGTFNREEDA ARAYDRAAIK FRGVDAVTNF NLVETHPEAI FLRGRSTDEI VDMLRRHTYE 120 EELQNNDTTC SSAAYPDIAC STPTEPREHM FDKAVTPSDV GKLNRLVIPK QYAEKYFPLD 180 EASGGDKGKG IMLNFEDNNY KTWRFHYSYW KSSQSYVLTK GWSHYVKEKR LQAGDIVTFE 240 RSSPSRRLFI TFRRRPFSLI SAATRPPTAL LSYLCCYPTA ATQTLPAFRQ SLCSEWVSAP 300 GSPFLQAAAI GHRPRRPLFD SLRRQTQFSR LLADPQVCLR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 2e-47 | 147 | 256 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 2e-47 | 147 | 256 | 4 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400502.1 | 1e-97 | PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like | ||||
Swissprot | Q9LS06 | 3e-94 | RAVL4_ARATH; AP2/ERF and B3 domain-containing transcription factor ARF14 | ||||
TrEMBL | A0A0D6QRH4 | 1e-110 | A0A0D6QRH4_ARACU; Uncharacterized protein | ||||
STRING | EFJ20021 | 5e-99 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25730.1 | 4e-88 | ethylene response DNA binding factor 3 |