PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11322g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MYB_related
Protein Properties Length: 335aa    MW: 36842.1 Da    PI: 8.382
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11322g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431.1e-1378122347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++ ++ + ++lG+g+W+ I+r + + Rt+ q+ s+ qky
    MA_11322g0010  78 PWTEEEHKMFLLGLHKLGKGDWRGISRNFVTSRTPTQVASHAQKY 122
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501589.125320IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129418.16171127IPR017930Myb domain
SuperFamilySSF466891.79E-1773128IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-1874126IPR006447Myb domain, plants
SMARTSM007177.9E-1175125IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-1175121IPR009057Homeodomain-like
PfamPF002493.0E-1178122IPR001005SANT/Myb domain
CDDcd001671.51E-978123No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNRRCSHCGH NGHNSRTCPD RGVKLFGVRL TTDEPMRKSL SMGNLPLTPE QSESGAAEDG  60
YVSDGLVHNS RERKKGVPWT EEEHKMFLLG LHKLGKGDWR GISRNFVTSR TPTQVASHAQ  120
KYFLRQSNLN KRKRRSSLFD ISTDSVEDCY QGIPELSPVM HELSLGQNSS LTSGNFFETG  180
GAPPNLAASV GAFSVPPLAA SRPVNPPCLS LGMFRLDKSD DDERTRDEAK YSSLKMAERQ  240
ETGHYSNPTS HYSFTLPFWP ELATKTSNII KPSAPTSPAM EARESIENSG LSLSIAPPCV  300
DPPPPHNTLN LDQSNSRRSA FRSSNLDSSN AISVV
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1136970.0BT113697.1 Picea glauca clone GQ03417_N02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396943.19e-82uncharacterized protein LOC112292572
TrEMBLA0A3G6JAG30.0A0A3G6JAG3_PINTA; Myb-related protein S3
STRINGPP1S66_90V6.14e-81(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.12e-68MYB_related family protein