PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_11306g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family C3H
Protein Properties Length: 786aa    MW: 85542.2 Da    PI: 7.7062
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_11306g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.9e-07338354926
                    GGGTS--TTTTT-SS-SS CS
        zf-CCCH   9 fartGtCkyGdrCkFaHg 26 
                    f++ GtC++Gd C FaHg
  MA_11306g0010 338 FRK-GTCRRGDLCEFAHG 354
                    667.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127961.5E-878154IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.66E-1579178IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.93782188IPR020683Ankyrin repeat-containing domain
SMARTSM002480.182111IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.5E-1482179IPR020683Ankyrin repeat-containing domain
CDDcd002041.37E-1284177No hitNo description
SMARTSM002480.011120152IPR002110Ankyrin repeat
PROSITE profilePS500889.938120155IPR002110Ankyrin repeat
SMARTSM003563313334IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.399328356IPR000571Zinc finger, CCCH-type
SMARTSM003561.9335355IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-5338354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-4362393IPR000571Zinc finger, CCCH-type
SMARTSM0035625364387IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.174364388IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 786 aa     Download sequence    Send to blast
MCGVLEHSKV SEDNEDNGKV ELIEKQLNKM KETQKCFSIL LELAANNDLI GFKQAVEEDG  60
SAIDEISFWY GRHNGSKQMG LEQRTPLMIA ALFGSIDILI YILSAYATCG IDVNLKCGSD  120
RSTALHCAAA GGSSFAVEAV KLLLQSAADV NCFDANGKRP VDVIVVSPKP SNAKVILNNM  180
LKAEYHSRAG ALTKVLSRVS DYGNTDLSGR GSNSLGSPPH LSSSLEAQSP KVLMSFPKIP  240
EASRNFADGI EKKEYPVDPS LPDIKNSVYS TDEFRMYSFK VRPCSRAYSH DWTECPFVHP  300
GENARRRDPR KYHYTSVPCP EFRKGTCRRG DLCEFPEFRK GTCRRGDLCE FAHGVFECWL  360
HPAQYRTRLC KDETNCTRRV CFFAHKPEEL RPLSVFTGSA VPSPRTSSSL DMNSTMSPLT  420
LGSPSPVFAM SSLSPSNPPQ GALSTPPMSP SSSSANSLAH SSFGGAWPQP NVPTLHLPGG  480
SLQVGLQASR LRASLNARDV SLEELNRDSD CEGQLINEFS SLSGPGNTLF RSGKYKSHGC  540
SVAPVNLEDL FASEMSPRRP GLEPSVFSQI SSQIQSHKAA QGQPQVQTPI SSQISQIHQM  600
QQGAIGGQGS GHLHSPVQPS HCMSSLGLDL ERQNSNGSSL SPALMAAMKS RSASFAQRDI  660
RCYSSRDLGA HGSLPSLADW GSPTGKANWG VQKGELNKFR KSASFGFRTS NEPDLSWVQT  720
SVKENPVDAV EGCTVGFSLE ALRNRQSENI NNAVLGLRNR QSENINNAVL GTWAEQQMHL  780
DQQMVA
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1121950.0BT112195.1 Picea glauca clone GQ03311_L15 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421436.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_024036574.10.0zinc finger CCCH domain-containing protein 30
TrEMBLA0A0C9RW210.0A0A0C9RW21_9SPER; TSA: Wollemia nobilis Ref_Wollemi_Transcript_9867_2934 transcribed RNA sequence
STRINGXP_006421436.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-176CCCH-type zinc finger protein with ARM repeat domain